Gene PSPTO_4631 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4631 
Symbol 
ID1186314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5230653 
End bp5234489 
Gene Length3837 bp 
Protein Length1278 aa 
Translation table11 
GC content61% 
IMG OID637395968 
Productsensory box/GGDEF domain/EAL domain protein 
Protein accessionNP_794382 
Protein GI28871763 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCCCACTT CAACGCCTTT GCCGTCATCC CATGTTGCTG CAGACAGTGC GACAAGGCCT 
CTGCGTGGGT CAGTGAAAGG TGTATTGGCG GCGCTGGTCT TGGTGATGCT TGCCATGTTG
CTCTGGCAAT TGATCGAGCA GTTTCACCAG ACTCAGGAAC GCCAGCGTCA GCGCAGCCTG
GAATACAGCA TCCAGCTTTC CGACCGGATG AGCCTGAACA TGGCGCTCAA GGCGCAGATC
GCCATGAACC TGCTGGACGA GGCGCAATCG TCCGGGGAAC GTCTGGAGCA GCCCGTCATG
CTGGCAGGCC TGCGCACTGC CCTGCCCGCG CTGCGCAGCG TTGCTCGCCT GAACCCGGCC
GGTGACATCG TCAGCGACAG CGCCGAAGTG CCCCGCGACG GCGACTTCCT CAGGCATGCC
ATGAGGCAGG CGCTGGGCCG CCCTTATTTC TACACCAGTA CCGACGACGG CAACCAGCTC
TACGTGCTGA TTCGCCAGGG CGGCGGCATT ACCGGTGACT ATTGGGCGCT GCGCATGGCA
CCGGACGCGC TGAAAGACCT GGCCAGCCAG CCGGCTCAGG ACTTTCAGCA CGTGTGGCGT
CTGGAGCAAC GCAAGACACA ACGGGTCATC CTCCGCGAAC CGCTGCCCTC CAATGATGCC
GACAGCGGTC TGTCCGAAAC CATTCTTCTG CAACCGCTCA GCAACAGTGA CTGGCAGCTG
CGCGGCCTGT TCGACACCTA CAAGGCGCGC AGCGAACTGC TCACGCCACT GATCGGCAAA
TGTGTGATCG GCCTGCTGCT CTCGATCCTG CCATTGATCG CACTGATCAG CCTGCGCCGA
CGTCAGCGCC AGATGCTGCA AAGTCGACGC CGCTATCGGG ACATCTTCGA AGGCGCGGGC
GTGGCGATCT GCGTGATGGA TATGTCTGGC CTGCAGGAGC AACTCGACGC CCTTCAGATC
AGCACGGGCG AAGAGTTTGA TCGGCTGCTC AAGAGCCAGC CTGCCTCGCT GAAAAGGCTG
CTGCAGCAAC TGCGCATCAA CGAGCTCAAC GAAGTTGCGC TTGGCCTGCT GGAAATCGAG
TGCAACGAAC AGGCCTGGCA GCAGTTGATC GAGGGCGAAT CGCGCACGCG CCCAGGCATC
GGCATTCAGG TGATACATGC CGTGCTTGCC AGACAGACAC GATTGGAACT GGAAATCTGC
CTGACACGTG CAAGTGGTCA GGACCAGCAT CTGTGGCTGG TCATGCGCCT GCCCGAAGCG
CGTAGCGACT TCGATGCCGT GATTCTCAGC ATCGGCGACA TCACCAGCCG CAAACAGACC
GAGCTGTCAC TGCTGGACCG CGAAAGCTTC TGGTCCGATG TGATCCGCAC CGTGCCGGAC
CACCTGTATG TGCAGGACGT GCTCAGCCAG CGCATGATCT ACAGCAACCA CCATTTTGGC
CATACGCTGG GCTACAACAA GTTCGAACTG CGCGCGATGG GCGAGTTCTT CTGGGAAATA
CTGCTGCACC CGGACGATGC CAAGAGCTAT CAGGACATGC GCCTGCGCCA GCGCCACCAC
GGGCACAACG AGTTGCTGCA ATGCGTGCTG CGCTTTCGCG ATCACGAGAA CAACTGGCGT
TGCTTCGACG TGCGCGAGCA GGCACTGGCC TGGGACACAG AACATCTTGT CACGCGCATC
ATCGGCATTG CCAAGGACAT CACCGAGCAG GTTGCGTCCA GCCAGTCGCT GCGCGACAGC
GAACAGCGCT ACCGTATGCT CGCCGAAAGC ATCAGCGACG TGATCTTTTC CACCGACGCC
CATCTGACCG TCAATTACGT CAGCCCCTCG GTCGAGCGCG CGCTGGGCTA CAGCGCCGAC
TGGATTACCC GGAACGGCTG GTCTGCCGCC ATTGCCAACC CCCAGCAACT GACCGGTTTT
GATGCGCTCA TCAGCCGCAT CAGCAAAGTC CTCCACAAGC CGCAGGAGCT GGCGCGGTTG
CGCGACGAAG TGACCACCCG GATGTTTCTG TTCGACTGCC TGCGTGCAGA CGGTCGCAAG
ATCCCGGTGG AACTGCGCGT GGTACTGGTA TGGGATGAAC ACGGCAATTT CGAGGGCATT
TTCGGCGTCG GCAGGGACAT CAGCCAGCAA CGCCGCGCCG AAAAAGACCT GCGCATGGCT
GCCACAGTAT TTGAGCATTC CGCCTCGGCC ATCCTCATCA CCGACCCCGC AGGCTATATC
GTGCAGGCCA ACGAGGCCTT CACGCGCGTC AGCGGCTACG AAGTCGCTCA GGTGCTCGAC
CAACTGCCGG GCATGCTCAC CGTTGAAAGC GAACAGGAAG CGCACTTGCG CTACATCCTC
AGGCAGTTGA ACGGGCAAGG CACCTGGGAA GGTGAAATCA GGCTCAAGCG ACGCAACGGC
GAACACTATC CGGCCTGGGT CGGCATCACG GCAGTGGTCG ATGACGAAGG CGACCTGGCC
AGTTATGTGT GCTTCTTCAG CGACATCAGC GAGCGCAAGG CCAGTGAGGA CCGCATCCAC
CGCCTGGCTT ATTACGACGC GCTGACGCAC CTGCCCAACC GCACACTGTT TCAGGATCGC
CTGCATTCGG CGTTGCAGCA GGCAGAGCGC CAGCAGGCCT GGGTGGTGCT GATGTTCCTC
GATCTCGACC GTTTCAAACC GATCAATGAC TCTCTGGGCC ATGCCGCCGG CGACCGGATG
CTGCAGGAAA TGGCCACGCG CCTGCTGGCC TGTGTATCCG CTGACGACAC CGTGGCACGC
ATGGGCGGTG ATGAATTCAC GCTGTTGCTG CAACCGGACA TCACGCGCGA AGCCGCGCTG
ACGCGCGCCA TTCACGTGGC CGAGCGGATC CTGACCAGTC TGGTGACGCC GTTTGTGCTT
GAAGGCCGTG AGTTCTTTGT CACCGCCAGT ATCGGCATCG CGCTCAGCCC GCAGGACGGT
AGCGAACTGA GCAAGTTGAT GAAGAACGCC GACACGGCGA TGTATCACGC CAAAGAGCGC
GGCAAAAATA ACTTCCAGTT CTACCAGACC GACATGAACG CCACGGCGCT GGAGCGTCTG
GAGCTGGAGA GCGATCTGCG TCACGCCCTG GAACAGCAGG AGTTCACCCT CTATTACCAG
CCGCAGTTCA GTGGTGACGG CAAACGCCTG ACGGGCGCAG AAGCGTTGCT GCGCTGGCGC
CATCCGCGTC GCGGGCTGGT GCCGCCGAAC GACTTCATCC CGGTGCTCGA AGAGCTCGGG
CTGGTGGTGG AAGTCGGCGA CTGGGTGCTC ACCGAAGCCT GTCGCCAGCT CAAGCACTGG
CATCAGGCGA AAGTTCGCGT GCCGAAAGTA TCGGTGAACA TCTCGGCGCG GCAATTCTCG
GACGGCCAGT TGGGTAAACG CATCGCCCAC ATACTGGAAC AGACGGGTCT GTCGCCTGCC
TGTCTTGAGC TGGAACTGAC CGAAAGCATC CTGATGCGCG AGGTCAACGA GGCCATGCAG
ATCCTCGACG GCCTGAAAAA CCTTGGCTTG AGCATCGCCG TCGATGACTT CGGCACCGGA
TACTCGTCGC TGAATTACCT CAAACAGTTC CCGATCGACG TGCTGAAGAT CGATCGCACC
TTCGTCGATG GCCTGCCCTC AGGCGAACAG GACGCCCAGA TCGCCCGCGC CATCATCGCC
ATGGCCCACA GCCTGAACCT CTCGGTCATC GCCGAGGGCG TGGAAACCCA CGAACAACTG
GAGTTCCTGC GTGAGCACGG CTGTGACGAA GTCCAGGGCT ACCTCTTCGG CCGCCCTATG
CCACCCAGCC AGTTCGAAGC GCAATTCAGC AACGATGCCC TGTTCATGCT GGATTAA
 
Protein sequence
MPTSTPLPSS HVAADSATRP LRGSVKGVLA ALVLVMLAML LWQLIEQFHQ TQERQRQRSL 
EYSIQLSDRM SLNMALKAQI AMNLLDEAQS SGERLEQPVM LAGLRTALPA LRSVARLNPA
GDIVSDSAEV PRDGDFLRHA MRQALGRPYF YTSTDDGNQL YVLIRQGGGI TGDYWALRMA
PDALKDLASQ PAQDFQHVWR LEQRKTQRVI LREPLPSNDA DSGLSETILL QPLSNSDWQL
RGLFDTYKAR SELLTPLIGK CVIGLLLSIL PLIALISLRR RQRQMLQSRR RYRDIFEGAG
VAICVMDMSG LQEQLDALQI STGEEFDRLL KSQPASLKRL LQQLRINELN EVALGLLEIE
CNEQAWQQLI EGESRTRPGI GIQVIHAVLA RQTRLELEIC LTRASGQDQH LWLVMRLPEA
RSDFDAVILS IGDITSRKQT ELSLLDRESF WSDVIRTVPD HLYVQDVLSQ RMIYSNHHFG
HTLGYNKFEL RAMGEFFWEI LLHPDDAKSY QDMRLRQRHH GHNELLQCVL RFRDHENNWR
CFDVREQALA WDTEHLVTRI IGIAKDITEQ VASSQSLRDS EQRYRMLAES ISDVIFSTDA
HLTVNYVSPS VERALGYSAD WITRNGWSAA IANPQQLTGF DALISRISKV LHKPQELARL
RDEVTTRMFL FDCLRADGRK IPVELRVVLV WDEHGNFEGI FGVGRDISQQ RRAEKDLRMA
ATVFEHSASA ILITDPAGYI VQANEAFTRV SGYEVAQVLD QLPGMLTVES EQEAHLRYIL
RQLNGQGTWE GEIRLKRRNG EHYPAWVGIT AVVDDEGDLA SYVCFFSDIS ERKASEDRIH
RLAYYDALTH LPNRTLFQDR LHSALQQAER QQAWVVLMFL DLDRFKPIND SLGHAAGDRM
LQEMATRLLA CVSADDTVAR MGGDEFTLLL QPDITREAAL TRAIHVAERI LTSLVTPFVL
EGREFFVTAS IGIALSPQDG SELSKLMKNA DTAMYHAKER GKNNFQFYQT DMNATALERL
ELESDLRHAL EQQEFTLYYQ PQFSGDGKRL TGAEALLRWR HPRRGLVPPN DFIPVLEELG
LVVEVGDWVL TEACRQLKHW HQAKVRVPKV SVNISARQFS DGQLGKRIAH ILEQTGLSPA
CLELELTESI LMREVNEAMQ ILDGLKNLGL SIAVDDFGTG YSSLNYLKQF PIDVLKIDRT
FVDGLPSGEQ DAQIARAIIA MAHSLNLSVI AEGVETHEQL EFLREHGCDE VQGYLFGRPM
PPSQFEAQFS NDALFMLD