Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4631 |
Symbol | |
ID | 1186314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5230653 |
End bp | 5234489 |
Gene Length | 3837 bp |
Protein Length | 1278 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637395968 |
Product | sensory box/GGDEF domain/EAL domain protein |
Protein accession | NP_794382 |
Protein GI | 28871763 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCCCACTT CAACGCCTTT GCCGTCATCC CATGTTGCTG CAGACAGTGC GACAAGGCCT CTGCGTGGGT CAGTGAAAGG TGTATTGGCG GCGCTGGTCT TGGTGATGCT TGCCATGTTG CTCTGGCAAT TGATCGAGCA GTTTCACCAG ACTCAGGAAC GCCAGCGTCA GCGCAGCCTG GAATACAGCA TCCAGCTTTC CGACCGGATG AGCCTGAACA TGGCGCTCAA GGCGCAGATC GCCATGAACC TGCTGGACGA GGCGCAATCG TCCGGGGAAC GTCTGGAGCA GCCCGTCATG CTGGCAGGCC TGCGCACTGC CCTGCCCGCG CTGCGCAGCG TTGCTCGCCT GAACCCGGCC GGTGACATCG TCAGCGACAG CGCCGAAGTG CCCCGCGACG GCGACTTCCT CAGGCATGCC ATGAGGCAGG CGCTGGGCCG CCCTTATTTC TACACCAGTA CCGACGACGG CAACCAGCTC TACGTGCTGA TTCGCCAGGG CGGCGGCATT ACCGGTGACT ATTGGGCGCT GCGCATGGCA CCGGACGCGC TGAAAGACCT GGCCAGCCAG CCGGCTCAGG ACTTTCAGCA CGTGTGGCGT CTGGAGCAAC GCAAGACACA ACGGGTCATC CTCCGCGAAC CGCTGCCCTC CAATGATGCC GACAGCGGTC TGTCCGAAAC CATTCTTCTG CAACCGCTCA GCAACAGTGA CTGGCAGCTG CGCGGCCTGT TCGACACCTA CAAGGCGCGC AGCGAACTGC TCACGCCACT GATCGGCAAA TGTGTGATCG GCCTGCTGCT CTCGATCCTG CCATTGATCG CACTGATCAG CCTGCGCCGA CGTCAGCGCC AGATGCTGCA AAGTCGACGC CGCTATCGGG ACATCTTCGA AGGCGCGGGC GTGGCGATCT GCGTGATGGA TATGTCTGGC CTGCAGGAGC AACTCGACGC CCTTCAGATC AGCACGGGCG AAGAGTTTGA TCGGCTGCTC AAGAGCCAGC CTGCCTCGCT GAAAAGGCTG CTGCAGCAAC TGCGCATCAA CGAGCTCAAC GAAGTTGCGC TTGGCCTGCT GGAAATCGAG TGCAACGAAC AGGCCTGGCA GCAGTTGATC GAGGGCGAAT CGCGCACGCG CCCAGGCATC GGCATTCAGG TGATACATGC CGTGCTTGCC AGACAGACAC GATTGGAACT GGAAATCTGC CTGACACGTG CAAGTGGTCA GGACCAGCAT CTGTGGCTGG TCATGCGCCT GCCCGAAGCG CGTAGCGACT TCGATGCCGT GATTCTCAGC ATCGGCGACA TCACCAGCCG CAAACAGACC GAGCTGTCAC TGCTGGACCG CGAAAGCTTC TGGTCCGATG TGATCCGCAC CGTGCCGGAC CACCTGTATG TGCAGGACGT GCTCAGCCAG CGCATGATCT ACAGCAACCA CCATTTTGGC CATACGCTGG GCTACAACAA GTTCGAACTG CGCGCGATGG GCGAGTTCTT CTGGGAAATA CTGCTGCACC CGGACGATGC CAAGAGCTAT CAGGACATGC GCCTGCGCCA GCGCCACCAC GGGCACAACG AGTTGCTGCA ATGCGTGCTG CGCTTTCGCG ATCACGAGAA CAACTGGCGT TGCTTCGACG TGCGCGAGCA GGCACTGGCC TGGGACACAG AACATCTTGT CACGCGCATC ATCGGCATTG CCAAGGACAT CACCGAGCAG GTTGCGTCCA GCCAGTCGCT GCGCGACAGC GAACAGCGCT ACCGTATGCT CGCCGAAAGC ATCAGCGACG TGATCTTTTC CACCGACGCC CATCTGACCG TCAATTACGT CAGCCCCTCG GTCGAGCGCG CGCTGGGCTA CAGCGCCGAC TGGATTACCC GGAACGGCTG GTCTGCCGCC ATTGCCAACC CCCAGCAACT GACCGGTTTT GATGCGCTCA TCAGCCGCAT CAGCAAAGTC CTCCACAAGC CGCAGGAGCT GGCGCGGTTG CGCGACGAAG TGACCACCCG GATGTTTCTG TTCGACTGCC TGCGTGCAGA CGGTCGCAAG ATCCCGGTGG AACTGCGCGT GGTACTGGTA TGGGATGAAC ACGGCAATTT CGAGGGCATT TTCGGCGTCG GCAGGGACAT CAGCCAGCAA CGCCGCGCCG AAAAAGACCT GCGCATGGCT GCCACAGTAT TTGAGCATTC CGCCTCGGCC ATCCTCATCA CCGACCCCGC AGGCTATATC GTGCAGGCCA ACGAGGCCTT CACGCGCGTC AGCGGCTACG AAGTCGCTCA GGTGCTCGAC CAACTGCCGG GCATGCTCAC CGTTGAAAGC GAACAGGAAG CGCACTTGCG CTACATCCTC AGGCAGTTGA ACGGGCAAGG CACCTGGGAA GGTGAAATCA GGCTCAAGCG ACGCAACGGC GAACACTATC CGGCCTGGGT CGGCATCACG GCAGTGGTCG ATGACGAAGG CGACCTGGCC AGTTATGTGT GCTTCTTCAG CGACATCAGC GAGCGCAAGG CCAGTGAGGA CCGCATCCAC CGCCTGGCTT ATTACGACGC GCTGACGCAC CTGCCCAACC GCACACTGTT TCAGGATCGC CTGCATTCGG CGTTGCAGCA GGCAGAGCGC CAGCAGGCCT GGGTGGTGCT GATGTTCCTC GATCTCGACC GTTTCAAACC GATCAATGAC TCTCTGGGCC ATGCCGCCGG CGACCGGATG CTGCAGGAAA TGGCCACGCG CCTGCTGGCC TGTGTATCCG CTGACGACAC CGTGGCACGC ATGGGCGGTG ATGAATTCAC GCTGTTGCTG CAACCGGACA TCACGCGCGA AGCCGCGCTG ACGCGCGCCA TTCACGTGGC CGAGCGGATC CTGACCAGTC TGGTGACGCC GTTTGTGCTT GAAGGCCGTG AGTTCTTTGT CACCGCCAGT ATCGGCATCG CGCTCAGCCC GCAGGACGGT AGCGAACTGA GCAAGTTGAT GAAGAACGCC GACACGGCGA TGTATCACGC CAAAGAGCGC GGCAAAAATA ACTTCCAGTT CTACCAGACC GACATGAACG CCACGGCGCT GGAGCGTCTG GAGCTGGAGA GCGATCTGCG TCACGCCCTG GAACAGCAGG AGTTCACCCT CTATTACCAG CCGCAGTTCA GTGGTGACGG CAAACGCCTG ACGGGCGCAG AAGCGTTGCT GCGCTGGCGC CATCCGCGTC GCGGGCTGGT GCCGCCGAAC GACTTCATCC CGGTGCTCGA AGAGCTCGGG CTGGTGGTGG AAGTCGGCGA CTGGGTGCTC ACCGAAGCCT GTCGCCAGCT CAAGCACTGG CATCAGGCGA AAGTTCGCGT GCCGAAAGTA TCGGTGAACA TCTCGGCGCG GCAATTCTCG GACGGCCAGT TGGGTAAACG CATCGCCCAC ATACTGGAAC AGACGGGTCT GTCGCCTGCC TGTCTTGAGC TGGAACTGAC CGAAAGCATC CTGATGCGCG AGGTCAACGA GGCCATGCAG ATCCTCGACG GCCTGAAAAA CCTTGGCTTG AGCATCGCCG TCGATGACTT CGGCACCGGA TACTCGTCGC TGAATTACCT CAAACAGTTC CCGATCGACG TGCTGAAGAT CGATCGCACC TTCGTCGATG GCCTGCCCTC AGGCGAACAG GACGCCCAGA TCGCCCGCGC CATCATCGCC ATGGCCCACA GCCTGAACCT CTCGGTCATC GCCGAGGGCG TGGAAACCCA CGAACAACTG GAGTTCCTGC GTGAGCACGG CTGTGACGAA GTCCAGGGCT ACCTCTTCGG CCGCCCTATG CCACCCAGCC AGTTCGAAGC GCAATTCAGC AACGATGCCC TGTTCATGCT GGATTAA
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Protein sequence | MPTSTPLPSS HVAADSATRP LRGSVKGVLA ALVLVMLAML LWQLIEQFHQ TQERQRQRSL EYSIQLSDRM SLNMALKAQI AMNLLDEAQS SGERLEQPVM LAGLRTALPA LRSVARLNPA GDIVSDSAEV PRDGDFLRHA MRQALGRPYF YTSTDDGNQL YVLIRQGGGI TGDYWALRMA PDALKDLASQ PAQDFQHVWR LEQRKTQRVI LREPLPSNDA DSGLSETILL QPLSNSDWQL RGLFDTYKAR SELLTPLIGK CVIGLLLSIL PLIALISLRR RQRQMLQSRR RYRDIFEGAG VAICVMDMSG LQEQLDALQI STGEEFDRLL KSQPASLKRL LQQLRINELN EVALGLLEIE CNEQAWQQLI EGESRTRPGI GIQVIHAVLA RQTRLELEIC LTRASGQDQH LWLVMRLPEA RSDFDAVILS IGDITSRKQT ELSLLDRESF WSDVIRTVPD HLYVQDVLSQ RMIYSNHHFG HTLGYNKFEL RAMGEFFWEI LLHPDDAKSY QDMRLRQRHH GHNELLQCVL RFRDHENNWR CFDVREQALA WDTEHLVTRI IGIAKDITEQ VASSQSLRDS EQRYRMLAES ISDVIFSTDA HLTVNYVSPS VERALGYSAD WITRNGWSAA IANPQQLTGF DALISRISKV LHKPQELARL RDEVTTRMFL FDCLRADGRK IPVELRVVLV WDEHGNFEGI FGVGRDISQQ RRAEKDLRMA ATVFEHSASA ILITDPAGYI VQANEAFTRV SGYEVAQVLD QLPGMLTVES EQEAHLRYIL RQLNGQGTWE GEIRLKRRNG EHYPAWVGIT AVVDDEGDLA SYVCFFSDIS ERKASEDRIH RLAYYDALTH LPNRTLFQDR LHSALQQAER QQAWVVLMFL DLDRFKPIND SLGHAAGDRM LQEMATRLLA CVSADDTVAR MGGDEFTLLL QPDITREAAL TRAIHVAERI LTSLVTPFVL EGREFFVTAS IGIALSPQDG SELSKLMKNA DTAMYHAKER GKNNFQFYQT DMNATALERL ELESDLRHAL EQQEFTLYYQ PQFSGDGKRL TGAEALLRWR HPRRGLVPPN DFIPVLEELG LVVEVGDWVL TEACRQLKHW HQAKVRVPKV SVNISARQFS DGQLGKRIAH ILEQTGLSPA CLELELTESI LMREVNEAMQ ILDGLKNLGL SIAVDDFGTG YSSLNYLKQF PIDVLKIDRT FVDGLPSGEQ DAQIARAIIA MAHSLNLSVI AEGVETHEQL EFLREHGCDE VQGYLFGRPM PPSQFEAQFS NDALFMLD
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