| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4593 |
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| Symbol | hopT1-2 |
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| ID | 1186276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5187920 |
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| End bp | 5189089 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637395931 |
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| Product | type III effector HopT1-2 |
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| Protein accession | NP_794344 |
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| Protein GI | 28871725 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.120927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAAA CAGTCAGCGA TAACTCGATA CCTGGTACGT ATGGCATCGC GTTTACGAGG
GTGGATACTG CGGCGCAGAT ATCCAGGCCG GTTCCCAGTG ATATCCAGCG CAACAGCAGT
ATCGAAAAGG CAGTCATCGA ACACATTGCT GACCACCCGG CGGCGAAGGT GGTAATGAGT
GCGTTGGTAG AGGCATTGAC AGGTGTTTTC GTAAAGGCTC AAGGTGAAAT CAAGGGCTGG
GCGGAAATCG TCCAGGCTGC TTCGCGTCCC CATGACAGCA ACCGTAAGGG CACTGGTGTG
CTGAGTCCGC GTTTCGATGT AATGGGCTGT GTGGGTTGGA ATGCTGCAAC GATTCGGGCT
ACCTGCCGGG TTGGCACACT GCGTGAAAAA GGCACGTTGT TCACTAACCT TATGTTGAGT
GACAACTTCA AGCGGATACT CGAGCGTTCG ATGACCGATC CTGCCTTGCA ACGCAAGCTG
GAAGGCTTGG TGGATCTGGA CTATCTGAAG ACCACGGATG GAAATCTGTA CGCAATGTCC
GGCTGGGCAG CCCGCGCCAG TGAATCTCGT GAACAGATTG GCAAGGCGGC ATTTGAGTCT
GCTTCAAACC TCGGCTCGGC ACAGATCAGC GCACGGGAGT TGGCTTTTCA TCGCCATAAT
CCGGTTAATC ATCCGTCGAA TCAGGCAAGA GTGGGTTTCG GCATATCGTC CCCAGCGAAT
AATGATCTGC AAGTTCTAAG AGGTCATGGC AGCAGCGTAT GGAAGGTGAA GCCAGGCAGC
GATTTTGCCC GGCTGGCCAG TGCATCGGGT AAGCCAGTGA TCGCAGGTCC ATCCGGTACC
GCGTCGCGCT TCATGGCGGT AGCACGCTTT ATTTCACCCG GCTGCCTGCG TGACTTGGGG
CTTGATAGTG AGCAAGCATT CAAAGAGCTG GTCCGCTATG CGTGCTACGG TTATTTCGGT
CAGGACGACC ACCACTCGAT GCTGGAGGTC AATCTGGGTA TTGCTCCCCA CGGTCTGGAT
GAGCAGTGGG ACGATAAGCT ATACACCGAG CCTTTCAGTC ACGTCATCAT GGGGCGCGGC
TTCAGTGTTG ACAATGCAGC TCAGCAGCAC ATCGTAGCGC GTGCGACCGA CGAGCCAGTC
GAGCATTCAG CCGCTGATCG GGTAGGCTGA
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| Protein sequence | MIKTVSDNSI PGTYGIAFTR VDTAAQISRP VPSDIQRNSS IEKAVIEHIA DHPAAKVVMS
ALVEALTGVF VKAQGEIKGW AEIVQAASRP HDSNRKGTGV LSPRFDVMGC VGWNAATIRA
TCRVGTLREK GTLFTNLMLS DNFKRILERS MTDPALQRKL EGLVDLDYLK TTDGNLYAMS
GWAARASESR EQIGKAAFES ASNLGSAQIS ARELAFHRHN PVNHPSNQAR VGFGISSPAN
NDLQVLRGHG SSVWKVKPGS DFARLASASG KPVIAGPSGT ASRFMAVARF ISPGCLRDLG
LDSEQAFKEL VRYACYGYFG QDDHHSMLEV NLGIAPHGLD EQWDDKLYTE PFSHVIMGRG
FSVDNAAQQH IVARATDEPV EHSAADRVG
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