| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4589 |
|---|
| Symbol | shcS2 |
|---|
| ID | 1186272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5185621 |
|---|
| End bp | 5186094 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637395928 |
|---|
| Product | type III chaperone ShcS2 |
|---|
| Protein accession | NP_794340 |
|---|
| Protein GI | 28871721 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0140753 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGT TCGCAACCGG ACTGCTAGAA CACAGCCTGA AACGGCTTGG ATACGACGCC
GCAGATTTGC AATCCCTTCG GGATGAAGGG TATTTGCTGT GGCACGGGAA AAACGGTCAC
ACCAGCCTGT TGGTGCCCGC TGCTGGCGGG GATGCGCTTT TTGTCATCAG CACCCTGAGC
TACATCGATC CTGAACAGGA CGGGCGGCTG CTGGCGCTTG CGCTGCATTT GAACTTGTCG
CCAGCCCACA CTCTGGGCGC CAGTATCGCG CTGGATATCG AGCAAAATAC CTTGTGCCTG
CGTTACACGC ACGACCTCAC TGGGCACGGC ACAGACAATT TGTCCCGCGC GCTTGAAAGC
ACTCAGGCAC TTGCCGAGCA GATCAAGCAG GTCATCGAAA CCTTCCGCAG TGAATTCGGA
CGCCCGCCAA TGCCCGCCCA CACAGCCCGA CGGCCAGATG CCGTGGCGCT TTAG
|
|---|
| Protein sequence | MIAFATGLLE HSLKRLGYDA ADLQSLRDEG YLLWHGKNGH TSLLVPAAGG DALFVISTLS
YIDPEQDGRL LALALHLNLS PAHTLGASIA LDIEQNTLCL RYTHDLTGHG TDNLSRALES
TQALAEQIKQ VIETFRSEFG RPPMPAHTAR RPDAVAL
|
|---|
| |