| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4577 |
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| Symbol | |
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| ID | 1186260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5173485 |
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| End bp | 5174378 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637395916 |
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| Product | glycine betaine/choline OpuC ABC transporter, periplasmic substrate-binding protein |
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| Protein accession | NP_794328 |
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| Protein GI | 28871709 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.464629 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA TATGCTTGTT TTTAGGCTTT GCCTTGCTGT TTCCGGCATT TGCCCAAGCC
GCGGAAAAGC CGCTGTTGCG CGTCGGAGCG CGGGTGTTCA CCGAACAGAC CATGCTCGCT
GAGCTGACTG CACAATATCT GCGCACCAAA AACTACGATG TGCAAATCAC TGGCGGTCTG
GGCAGCAACC TGGCGCGCAG CGCACAGGAA AGCGGCCAAC TGGATCTGCT GTGGGAATAC
ACCGGCGTTT CATTGGTGGC CTACAACCAC ATCGATGAAA AGCTCGACAG CGCACAGACC
TATGCGCGGG TGAAGGAAGT CGACGCAAAG AAAGGCCTGG TCTGGCTTTC CCCGTCCAAG
TTCAACAACA CCTACGCGCT GGCACTGCCG CAGAAGATTG CCGACAAGTA CCCGCAGGTC
AACACCATGA CCGACCTGAC CAAAGTGCTC AAGGACGAAG CCAAAGAGGG GCACCTGGTC
GCGCTGGACA CCGAGTTTGC CAACCGTTCC GACGGCCTGG TCGGCATGGT CAAGCACTAC
GGCATGAATC TGGGACGTGA GAATACCCGG CAGATGGACT CGGGGCTGGT GTACACCGCA
TTGCAGAATG GCCAGGTGTT CGCAGGGCTC GTCTACACCA CCGACGGTCG CCTGAATGCG
TTCAAGCTCA AAGTTCTCGA AGATGACAAA CACTACTTTC CGGACTACAC CGCTGCGCCG
GTGATTCGTC AGGAGTACCT GGACAAGCAT CCGGACATCG CCACGCTGCT CAAGCCGCTG
GCTGAGCTTC TGGATAATCA GACCATGATC GACCTCAACG CTCGCGTCGA CGTCGGCCAT
GAGAGCCCAT CCTCGGTTGC TGCAGATTTC CTGCGCCAGC ATCCATTGAA CTAA
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| Protein sequence | MKKICLFLGF ALLFPAFAQA AEKPLLRVGA RVFTEQTMLA ELTAQYLRTK NYDVQITGGL
GSNLARSAQE SGQLDLLWEY TGVSLVAYNH IDEKLDSAQT YARVKEVDAK KGLVWLSPSK
FNNTYALALP QKIADKYPQV NTMTDLTKVL KDEAKEGHLV ALDTEFANRS DGLVGMVKHY
GMNLGRENTR QMDSGLVYTA LQNGQVFAGL VYTTDGRLNA FKLKVLEDDK HYFPDYTAAP
VIRQEYLDKH PDIATLLKPL AELLDNQTMI DLNARVDVGH ESPSSVAADF LRQHPLN
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