| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4575 |
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| Symbol | opuCA |
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| ID | 1186258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5171664 |
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| End bp | 5172821 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395914 |
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| Product | glycine betaine/choline OpuC ABC transporter, ATP-binding protein |
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| Protein accession | NP_794326 |
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| Protein GI | 28871707 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1125] ABC-type proline/glycine betaine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.449322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGAAC TCCAGAACCT CTCCAAGACT TTCCAGAGCA ACGGCAAAGA AGTGAAGGCT
GTCGATTCGG TCAGCCTCAC GGTCAACGAA GGCGAAATCT GTGTCTTCCT CGGCCCGTCG
GGCTGCGGCA AGAGCACCAC GCTGAAAATG ATCAACCGTC TGATCATGCC GACCTCCGGC
AAAGTGCTGA TCAACGGCGA AGACACCACT GACCTGGATG AAGTGACCTT GCGTCGCAAC
ATCGGCTACG TGATCCAGCA GATCGGTCTG TTCCCGAACA TGACCATCGA GGAAAACATC
GTGGTCGTGC CTAAATTGCT GGGCTGGGAC AAACAGCGTT GCCATGACCG TGCGCGCGAA
CTGATGAGCA TGATCAAGCT GGAGCCCAAG CAGTACCTGC ATCGCTACCC GCGCGAATTG
TCCGGTGGTC AGCAGCAGCG TATCGGGGTG ATCCGCGCGC TGGCGGCCGA TGCGCCGTTG
CTGCTGATGG ACGAGCCGTT CGGTGCGGTC GATCCGATCA ACCGCGAGAT GATCCAGAAC
GAGTTCTTCG AGATGCAGCG GGCGCTGAAC AAGACCGTGA TCATGGTCAG CCACGACATT
GACGAAGCCA TCAAGCTGGG CGACAAGATC GCGATTTTCC GTGGCGGTAA ACTGCTGCAG
ATCGATCACC CGGACACCTT GCTCGCGCAT CCGGCTGACG ACTTCGTCAG CAGCTTCGTC
GGCCAGGACA GCACCCTCAA GCGCCTGCTG CTGGTCAAGG CAGAAGACGC CGCCGACAAC
GCGCCATCGG TCAGCCCGGA AACCCCGGTT GCCGATGCGC TGGAGGTGAT GGACGAAAAC
GACCGTCGCT ACATCGTCGT CACCGACAGC GAGAACAAGG CGATGGGCTA CGTACGACGT
CGTGACCTGC ATCGCCAGCA AGGCACGTGC GCGCAGTTCC TGCGTGAGTT CAACGCCACG
GCGGCCTACG ACGAGCACTT GCGCATCCTG CTGTCGCGTA TGTACGAGTT CAACCGCGCC
TGGCTGCCGG TGCTGGATGC CGAGAACGTG TTCCTGGGTG AGGTGACGCA AGAGTCGATT
GCGGCGTATC TGAGTTCGGG CCGTTCGCGC GGCATGAAGA CCAGTATTGT TTCGCCTGCC
GAGCAAGTGG CTTCTTGA
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| Protein sequence | MIELQNLSKT FQSNGKEVKA VDSVSLTVNE GEICVFLGPS GCGKSTTLKM INRLIMPTSG
KVLINGEDTT DLDEVTLRRN IGYVIQQIGL FPNMTIEENI VVVPKLLGWD KQRCHDRARE
LMSMIKLEPK QYLHRYPREL SGGQQQRIGV IRALAADAPL LLMDEPFGAV DPINREMIQN
EFFEMQRALN KTVIMVSHDI DEAIKLGDKI AIFRGGKLLQ IDHPDTLLAH PADDFVSSFV
GQDSTLKRLL LVKAEDAADN APSVSPETPV ADALEVMDEN DRRYIVVTDS ENKAMGYVRR
RDLHRQQGTC AQFLREFNAT AAYDEHLRIL LSRMYEFNRA WLPVLDAENV FLGEVTQESI
AAYLSSGRSR GMKTSIVSPA EQVAS
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