| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4572 |
|---|
| Symbol | |
|---|
| ID | 1186255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5167536 |
|---|
| End bp | 5168615 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637395911 |
|---|
| Product | pyridoxal-dependent decarboxylase, pyridoxal binding domain protein |
|---|
| Protein accession | NP_794323 |
|---|
| Protein GI | 28871704 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTCATTG ATACCGCCAT CATCAGCAAG GCCTATGACG ACCTGCGTGC GGGCTTCGAT
TTCGCCAAGG TTTACTACGC CGTCAAAGCC AACCCGGCCG TTGAAGTCAT CAATCTGCTC
AAGGACAAGG GTTCGAGCTT CGACATCGCT TCGATCTACG AACTGGACAA GGTCCTGAGT
TGCGGCGTTG GCCCTGAGCG TATGAGCTAT GGCAACACCA TCAAGAAATC CAAGGACATC
CGCTACTTCT ACGAGAAGGG CGTGCGTCTG TTTGCAACCG ATTCCGAAGC TGATCTGCGC
AACATTGCCA AGGCTGCACC GGGCGCGAAA GTCTATGTGC GCATCCTGAC CGAAGGCTCG
ACCACTGCCG ACTGGCCTCT GTCGCGCAAA TTCGGCTGCC AGACCGACAT GGCCATGGAC
CTGCTGATTC TTGCCCGTGA CCTGGGCCTG GTACCTTACG GCATCTCGTT CCACGTTGGC
TCGCAGCAGC GCGACATCAG CGTCTGGGAC GCTGCCATCG CCAAGGTCAA AGTGATTTTC
GAGCGCCTGA AAGAAGAAGA CGGCATCGTT CTGAAGCTGA TCAACATGGG TGGCGGCTTC
CCGGCCAACT ACATCACCCG TACCAACAGC CTGGAAACCT ACGCTGAAGA AATCATCCGC
TTTCTGAAGG AAGACTTCGG TGATGACCTG CCGGAAATCA TTCTGGAGCC AGGCCGTTCG
CTGATCTCCA ATGCCGGTAT TCTGGTCAGC GAAGTCGTGC TGGTCGCGCG CAAGTCGCGC
ACCGCCGTCG AGCGTTGGGT CTACACCGAC GTGGGCAAAT TCTCCGGCCT GATCGAAACC
ATGGACGAAG CCATCAAGTT TCCGATCTGG ACCGAAAAAA AAGGCGAGAT GGAAGAAGTG
GTCATTGCCG GCCCGACCTG CGACAGCGCC GACATCATGT ACGAGAACTA CAAGTATGGC
CTGCCGCTCA ACCTGGCCAT CGGTGACCGT ATGTACTGGC TGTCGACCGG CGCCTACACT
ACCAGCTACA GCGCGGTGGA GTTCAACGGC TTCCCGCCGC TGAAATCGTT CTACCTGTAA
|
|---|
| Protein sequence | MVIDTAIISK AYDDLRAGFD FAKVYYAVKA NPAVEVINLL KDKGSSFDIA SIYELDKVLS
CGVGPERMSY GNTIKKSKDI RYFYEKGVRL FATDSEADLR NIAKAAPGAK VYVRILTEGS
TTADWPLSRK FGCQTDMAMD LLILARDLGL VPYGISFHVG SQQRDISVWD AAIAKVKVIF
ERLKEEDGIV LKLINMGGGF PANYITRTNS LETYAEEIIR FLKEDFGDDL PEIILEPGRS
LISNAGILVS EVVLVARKSR TAVERWVYTD VGKFSGLIET MDEAIKFPIW TEKKGEMEEV
VIAGPTCDSA DIMYENYKYG LPLNLAIGDR MYWLSTGAYT TSYSAVEFNG FPPLKSFYL
|
|---|
| |