Gene PSPTO_4562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4562 
Symbol 
ID1186245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5156274 
End bp5157284 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content60% 
IMG OID637395903 
Productdipeptide ABC transporter, permease protein 
Protein accessionNP_794315 
Protein GI28871696 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTAGTT TTATCGCCCG CCGAGTGGGG TTGCTGATAC CCACTTTCTT CGGCATCACC 
TTGTTGACGT TCGCGCTGAT TCGTCTGATT CCGGGCGACC CGGTCGAAGT CATGATGGGT
GAACGCCGGG TCGATCCGGA AATGCACGCT CAGGCCATGG AACGTCTTGG CCTGAACAAA
CCGCTGTATG CCCAGTACAT CGATTACATC GGCAAGCTCG CCCAGGGCGA TCTCGGTGAA
TCGCTGCGTA CGCGCACCAG CGTCTGGAGC GAATTCACCT CGCTGTTCCC GGCAACCCTG
GAGTTGTCGC TGGCAGCACT GATTTTCGCA GGCATCCTCG GCTTGCTGGC CGGCGTCATC
GCCGCACTCA AGCGAGGGTC CCTGTTCGAT CATGGGGTCA TGGGGATTTC CCTGGCCGGC
TATTCCATGC CGATCTTCTG GTGGGGCCTG ATCCTCATCA TGTTCTTCTC GGTAACCCTG
GGCTGGACCC CGGTTTCCGG GCGCATCGAC CTGTTGTACG ACATCCCGCC AGTCACCGGT
TTCATGCTGA TCGACACCCT GCTCAGTGAC GAGCAAGGCG CGTTTCTCGA TGCACTGCAT
CACCTGATTC TTCCGGCCAT CGTGCTGGGC ACCATCCCGC TGGCGGTAAT CGCCCGGATG
ACCCGCTCCT CGATGCTTGA AGTGCTGCGT GAAGACTACG TGCGTACCGC CCGGGCCAAA
GGCCTGTCAC CTGCTCGTGT AGTGTTCGTG CACGGCCTGC GCAACGCGCT GATTCCAGTG
CTGACCGTGT TCGGCCTGCA AGTCGGTGCT CTGCTGGCCG GTGCGGTCCT GACCGAAACG
ATCTTCTCCT GGCCGGGTAT CGGCAAGTGG CTGATCGAAG CCATCGGCGC ACGGGACTAT
CCGGTCGTGC AAAACGGCAT TCTGCTGATC GCCTGTCTGG TGATCCTGGT CAACTTCGTG
GTGGATATCC TCTACGGCTT TGCCAACCCA CGCATTCGTC ACCAGCGCTG A
 
Protein sequence
MFSFIARRVG LLIPTFFGIT LLTFALIRLI PGDPVEVMMG ERRVDPEMHA QAMERLGLNK 
PLYAQYIDYI GKLAQGDLGE SLRTRTSVWS EFTSLFPATL ELSLAALIFA GILGLLAGVI
AALKRGSLFD HGVMGISLAG YSMPIFWWGL ILIMFFSVTL GWTPVSGRID LLYDIPPVTG
FMLIDTLLSD EQGAFLDALH HLILPAIVLG TIPLAVIARM TRSSMLEVLR EDYVRTARAK
GLSPARVVFV HGLRNALIPV LTVFGLQVGA LLAGAVLTET IFSWPGIGKW LIEAIGARDY
PVVQNGILLI ACLVILVNFV VDILYGFANP RIRHQR