Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4562 |
Symbol | |
ID | 1186245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5156274 |
End bp | 5157284 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395903 |
Product | dipeptide ABC transporter, permease protein |
Protein accession | NP_794315 |
Protein GI | 28871696 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAGTT TTATCGCCCG CCGAGTGGGG TTGCTGATAC CCACTTTCTT CGGCATCACC TTGTTGACGT TCGCGCTGAT TCGTCTGATT CCGGGCGACC CGGTCGAAGT CATGATGGGT GAACGCCGGG TCGATCCGGA AATGCACGCT CAGGCCATGG AACGTCTTGG CCTGAACAAA CCGCTGTATG CCCAGTACAT CGATTACATC GGCAAGCTCG CCCAGGGCGA TCTCGGTGAA TCGCTGCGTA CGCGCACCAG CGTCTGGAGC GAATTCACCT CGCTGTTCCC GGCAACCCTG GAGTTGTCGC TGGCAGCACT GATTTTCGCA GGCATCCTCG GCTTGCTGGC CGGCGTCATC GCCGCACTCA AGCGAGGGTC CCTGTTCGAT CATGGGGTCA TGGGGATTTC CCTGGCCGGC TATTCCATGC CGATCTTCTG GTGGGGCCTG ATCCTCATCA TGTTCTTCTC GGTAACCCTG GGCTGGACCC CGGTTTCCGG GCGCATCGAC CTGTTGTACG ACATCCCGCC AGTCACCGGT TTCATGCTGA TCGACACCCT GCTCAGTGAC GAGCAAGGCG CGTTTCTCGA TGCACTGCAT CACCTGATTC TTCCGGCCAT CGTGCTGGGC ACCATCCCGC TGGCGGTAAT CGCCCGGATG ACCCGCTCCT CGATGCTTGA AGTGCTGCGT GAAGACTACG TGCGTACCGC CCGGGCCAAA GGCCTGTCAC CTGCTCGTGT AGTGTTCGTG CACGGCCTGC GCAACGCGCT GATTCCAGTG CTGACCGTGT TCGGCCTGCA AGTCGGTGCT CTGCTGGCCG GTGCGGTCCT GACCGAAACG ATCTTCTCCT GGCCGGGTAT CGGCAAGTGG CTGATCGAAG CCATCGGCGC ACGGGACTAT CCGGTCGTGC AAAACGGCAT TCTGCTGATC GCCTGTCTGG TGATCCTGGT CAACTTCGTG GTGGATATCC TCTACGGCTT TGCCAACCCA CGCATTCGTC ACCAGCGCTG A
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Protein sequence | MFSFIARRVG LLIPTFFGIT LLTFALIRLI PGDPVEVMMG ERRVDPEMHA QAMERLGLNK PLYAQYIDYI GKLAQGDLGE SLRTRTSVWS EFTSLFPATL ELSLAALIFA GILGLLAGVI AALKRGSLFD HGVMGISLAG YSMPIFWWGL ILIMFFSVTL GWTPVSGRID LLYDIPPVTG FMLIDTLLSD EQGAFLDALH HLILPAIVLG TIPLAVIARM TRSSMLEVLR EDYVRTARAK GLSPARVVFV HGLRNALIPV LTVFGLQVGA LLAGAVLTET IFSWPGIGKW LIEAIGARDY PVVQNGILLI ACLVILVNFV VDILYGFANP RIRHQR
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