Gene PSPTO_4558 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4558 
Symbol 
ID1186241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5149459 
End bp5151081 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content56% 
IMG OID637395899 
Productdipeptide ABC transporter, periplasmic dipeptide-binding protein, putative 
Protein accessionNP_794311 
Protein GI28871692 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.44901 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCAAAC ACGCGGTCAT TCCGTTTCTG GTCGGCGCCA GCTTGCTCGC CAGTGCACCT 
TTCGCTCACG CAGCATCGAA CCTGGTGTTC TGCTCCGAGG GCAGCCCTGC CGGCTTCGAT
CCGGGTCAAT ACACCACAGG TACCGATTTC GACGCCTCGG CCGAGACCAT CTTCAACCGT
TTGAGCCAGT TTGAGCGTGG CGGCACCGCC GTTGTGCCAG GCCTGGCAAC AAAATGGGAC
ATCTCGGAAG ACGGCCTGAC GTACACCTTC CATTTGCGTG AAGGCGTCAA GTTCCACACC
ACGTCCTATT TCAAGCCGAC CCGCGAATTC AACGCCGATG ACGTGCTGTT CACCTTCAAT
CGCATGATCG ACAAGGACAT GCCTTACCGC AAAGCGTATC CGACCGAATT CCCGTACTTC
ACCGACATGG CGATGGACAC CAACATCACC AAGATCGAAA AAGTCGACGA CCACACCGTC
AAGTTCGTTC TGGGCAAGGT CGACGCCGCG TTCATCCAGA ACATGGCGAT GAGCTTCGCG
TCCATCCAGT CCGCAGAGTA CGCCGCCAAG CTGCTCAAGG AAGGCAAGCC GGAACTGATC
AACCAGCAGC CGATCGGCAC TGGTCCGTTC GTGTTCAAGA GCTACCAGAA AGACTCCAAC
ATCCGCTACA CCGGCAACAA GGATTACTGG AAGCCTGAGG ACGTCAAAGT CGACAACCTG
ATCTTCGCCA TCACCACCGA CGCATCGGTG CGCATGCAGA AGCTCAAGAA AAACGAATGC
CAGATCACCG CTTATCCGCG TCCTGCCGAC CTCGCCCCCC TCAAGGCCGA CAAGAATCTG
AAGATGCCGG ATCAGGCTGG CTTCAACCTG GGTTACATCG CCTACAACGT GATGCCTCAG
ATCAAAGGCG AAGACCATCC AAACCCGCTG GCTCAGCTGA AAGTGCGTCA GGCACTGGAC
ATGGCAGTCA ACAAGCAGCA GATCATCGAC TCGGTTTACC AGGGTGCAGG TCAATTGGCG
GTCAACGCCA TGCCGCCGAC CCAGTGGTCT TACGACACCA CCATCAAGGA TGCCAAGTAT
GATCCCGAGA AGGCTCGCCA ACTGCTCAAG GAAGCGGGCA TCAAGGAAGG CACCGAAATT
ACCCTTTGGG CAATGCCGGT TCAGCGTCCT TACAACCCCA ACGCCAAACT GATGGCCGAA
ATGCTCCAGG CCGACTGGAA GAAGATCGGT ATCAGCGCCA AGATCGTCAG CTATGAATGG
GGCGAGTACA TCAAGCGCGC CAAGAATGGT GAAAACGGCG CCATGCTGAT TGGCTGGAGC
GGTGACAATG GTGATCCGGA CAACTGGCTC GGCACCCTGT TTGGCTGCGA CGCACTCAAT
GGCAACAACT TTGCCAAGTG GTGCGACAAG CCTTTCGACA CGCTGATCCA TCAGGCAAAA
CAGACGCCTG ATCAGGCCAA GCGCACCGAA CTGTACAAAC AGGCGCAACA CCTCCTGAAA
GACGCCGTGC CGATGACGCC TATCGCGCAC TCAACTGTCT ACCAACCCAT GCGCACCAGC
GTACAGGACT TCAAGATCAG CCCGTTTGGC TTGAATTCCT TCTACGGTGT CAGCGTGAAG
TAA
 
Protein sequence
MLKHAVIPFL VGASLLASAP FAHAASNLVF CSEGSPAGFD PGQYTTGTDF DASAETIFNR 
LSQFERGGTA VVPGLATKWD ISEDGLTYTF HLREGVKFHT TSYFKPTREF NADDVLFTFN
RMIDKDMPYR KAYPTEFPYF TDMAMDTNIT KIEKVDDHTV KFVLGKVDAA FIQNMAMSFA
SIQSAEYAAK LLKEGKPELI NQQPIGTGPF VFKSYQKDSN IRYTGNKDYW KPEDVKVDNL
IFAITTDASV RMQKLKKNEC QITAYPRPAD LAPLKADKNL KMPDQAGFNL GYIAYNVMPQ
IKGEDHPNPL AQLKVRQALD MAVNKQQIID SVYQGAGQLA VNAMPPTQWS YDTTIKDAKY
DPEKARQLLK EAGIKEGTEI TLWAMPVQRP YNPNAKLMAE MLQADWKKIG ISAKIVSYEW
GEYIKRAKNG ENGAMLIGWS GDNGDPDNWL GTLFGCDALN GNNFAKWCDK PFDTLIHQAK
QTPDQAKRTE LYKQAQHLLK DAVPMTPIAH STVYQPMRTS VQDFKISPFG LNSFYGVSVK