Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4558 |
Symbol | |
ID | 1186241 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5149459 |
End bp | 5151081 |
Gene Length | 1623 bp |
Protein Length | 540 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637395899 |
Product | dipeptide ABC transporter, periplasmic dipeptide-binding protein, putative |
Protein accession | NP_794311 |
Protein GI | 28871692 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.44901 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCAAAC ACGCGGTCAT TCCGTTTCTG GTCGGCGCCA GCTTGCTCGC CAGTGCACCT TTCGCTCACG CAGCATCGAA CCTGGTGTTC TGCTCCGAGG GCAGCCCTGC CGGCTTCGAT CCGGGTCAAT ACACCACAGG TACCGATTTC GACGCCTCGG CCGAGACCAT CTTCAACCGT TTGAGCCAGT TTGAGCGTGG CGGCACCGCC GTTGTGCCAG GCCTGGCAAC AAAATGGGAC ATCTCGGAAG ACGGCCTGAC GTACACCTTC CATTTGCGTG AAGGCGTCAA GTTCCACACC ACGTCCTATT TCAAGCCGAC CCGCGAATTC AACGCCGATG ACGTGCTGTT CACCTTCAAT CGCATGATCG ACAAGGACAT GCCTTACCGC AAAGCGTATC CGACCGAATT CCCGTACTTC ACCGACATGG CGATGGACAC CAACATCACC AAGATCGAAA AAGTCGACGA CCACACCGTC AAGTTCGTTC TGGGCAAGGT CGACGCCGCG TTCATCCAGA ACATGGCGAT GAGCTTCGCG TCCATCCAGT CCGCAGAGTA CGCCGCCAAG CTGCTCAAGG AAGGCAAGCC GGAACTGATC AACCAGCAGC CGATCGGCAC TGGTCCGTTC GTGTTCAAGA GCTACCAGAA AGACTCCAAC ATCCGCTACA CCGGCAACAA GGATTACTGG AAGCCTGAGG ACGTCAAAGT CGACAACCTG ATCTTCGCCA TCACCACCGA CGCATCGGTG CGCATGCAGA AGCTCAAGAA AAACGAATGC CAGATCACCG CTTATCCGCG TCCTGCCGAC CTCGCCCCCC TCAAGGCCGA CAAGAATCTG AAGATGCCGG ATCAGGCTGG CTTCAACCTG GGTTACATCG CCTACAACGT GATGCCTCAG ATCAAAGGCG AAGACCATCC AAACCCGCTG GCTCAGCTGA AAGTGCGTCA GGCACTGGAC ATGGCAGTCA ACAAGCAGCA GATCATCGAC TCGGTTTACC AGGGTGCAGG TCAATTGGCG GTCAACGCCA TGCCGCCGAC CCAGTGGTCT TACGACACCA CCATCAAGGA TGCCAAGTAT GATCCCGAGA AGGCTCGCCA ACTGCTCAAG GAAGCGGGCA TCAAGGAAGG CACCGAAATT ACCCTTTGGG CAATGCCGGT TCAGCGTCCT TACAACCCCA ACGCCAAACT GATGGCCGAA ATGCTCCAGG CCGACTGGAA GAAGATCGGT ATCAGCGCCA AGATCGTCAG CTATGAATGG GGCGAGTACA TCAAGCGCGC CAAGAATGGT GAAAACGGCG CCATGCTGAT TGGCTGGAGC GGTGACAATG GTGATCCGGA CAACTGGCTC GGCACCCTGT TTGGCTGCGA CGCACTCAAT GGCAACAACT TTGCCAAGTG GTGCGACAAG CCTTTCGACA CGCTGATCCA TCAGGCAAAA CAGACGCCTG ATCAGGCCAA GCGCACCGAA CTGTACAAAC AGGCGCAACA CCTCCTGAAA GACGCCGTGC CGATGACGCC TATCGCGCAC TCAACTGTCT ACCAACCCAT GCGCACCAGC GTACAGGACT TCAAGATCAG CCCGTTTGGC TTGAATTCCT TCTACGGTGT CAGCGTGAAG TAA
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Protein sequence | MLKHAVIPFL VGASLLASAP FAHAASNLVF CSEGSPAGFD PGQYTTGTDF DASAETIFNR LSQFERGGTA VVPGLATKWD ISEDGLTYTF HLREGVKFHT TSYFKPTREF NADDVLFTFN RMIDKDMPYR KAYPTEFPYF TDMAMDTNIT KIEKVDDHTV KFVLGKVDAA FIQNMAMSFA SIQSAEYAAK LLKEGKPELI NQQPIGTGPF VFKSYQKDSN IRYTGNKDYW KPEDVKVDNL IFAITTDASV RMQKLKKNEC QITAYPRPAD LAPLKADKNL KMPDQAGFNL GYIAYNVMPQ IKGEDHPNPL AQLKVRQALD MAVNKQQIID SVYQGAGQLA VNAMPPTQWS YDTTIKDAKY DPEKARQLLK EAGIKEGTEI TLWAMPVQRP YNPNAKLMAE MLQADWKKIG ISAKIVSYEW GEYIKRAKNG ENGAMLIGWS GDNGDPDNWL GTLFGCDALN GNNFAKWCDK PFDTLIHQAK QTPDQAKRTE LYKQAQHLLK DAVPMTPIAH STVYQPMRTS VQDFKISPFG LNSFYGVSVK
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