| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4557 |
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| Symbol | |
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| ID | 1186240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5147594 |
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| End bp | 5149201 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395898 |
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| Product | peptide ABC transporter, periplasmic peptide-binding protein |
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| Protein accession | NP_794310 |
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| Protein GI | 28871691 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGACACA CACTCTTCAA ACCGCTGCTG CTGACGACCG CGCTGCTGGC CTGCGCACCA
CTGGCACAGG CGGCAAGCAC GCTGGTGTAT TGCTCGGAAG CCAGCCCGGC GGGTTTCGAC
CCCAGCCAGT ACACCAGCGG GACGGACTTC GATGCCTCGG CCGAGACCGT CTTCAACCGC
CTGACCCAGT TCAAGCGCGG CGGCACCGAA GTGGAACCGG GCCTGGCGAC GCGCTGGGAC
GTTTCGCCGG ACGGCCTGAC GTACACCTTC CACCTGCGCG ACGGCGTGAA GTTCCACACC
ACGGACTATT TCACCCCGAC CCGTACGTTC AATGCCGATG ACGTGTTGTT CACGTTCAAC
CGCCTGCTCG ACGCCAACCA CCCGTTCCGC AAGGCCTACC CGTCGGAGTC GCCGTACTTT
ACCGACATGG GCCTGAACAC CACGATCAAG AGCGTCGATA AAGTCGATGC GCAGACCGTC
AGGTTCACGC TGAACAACAC CGATGCCGCG TTCGTGCAGA ACCTGGCCAT GAGCTTTGCT
TCCATTCAGT CCGCCGAATA CGCGGGCAAG CTGCTCAAGG AAGGCAAGGC AGACGAGCTG
AACCAGAAGC CGATCGGCAC CGGGCCGTTC GTATTCAAGC GCTACCAGAA AGACTCGCAG
ATCCGGTACA CCGGCAATAC CGAGTACTGG AAGCCCGAGG ACGTGAAAAT CGACAACCTG
ATCTTCTCGA TCAGCAGCGA TGCCGCCGTG CGCATGCAGA AGCTCAAGGC CGGCGAGTGC
CAGGTGAGCG GCTACCCGCG CCCGCAAGAC ATCGAAGAGA TGAAAAAGGA CCCGAAACTG
AAGGTCCTCA GCCAGGCAGG TTTCAACCTG GGGTTCCTGG CCTACAACGT TACCCATGCG
CCGCTGGACC AGCTCAAGGT GCATCAGGCG CTGGACATGG CCATCGACAA ACCGGCGATC
ATCAAGGCCG TGTATCAGAG CGCCGGTCAG TTGGCCGAAA ACGCCCTGCC GCCAGGTCAG
TGGAGCTATG ACCCGACCAT CAAGGACGCG CCTTACGACC CGACCAAGGC CAGGCAGTTG
CTCAAGGAAG CAGGCGTGGC ACCGGGTACG AAGATTGATC TGTGGGCCAT GACAGTACAG
CGCGCCTCCA ACCCCAACGC ACGCATGTCG GCACAGATGA TCCAGTCGGA TTGGGACAAG
ATCGGCATCA AGGCCAACAT CGTCAGTTAC GAGTGGGGCG AGTACATCAA GCGCGCCAAG
GCGGGCGAGC ATGACGCGAT GATCTACGGC TGGACCGGTG ACAACGGCGA TCCTGACAAC
TGGCTCGGCG TGCTTTACAG CTGTGCAGCC GTCAAGGGCA GCAACTACGC CAAATGGTGC
GACCCGGCTT ACGACAAGCT GGTGCAACAG GCCAAGCTCA CAACCAGCCG GGATGAACGC
ATCAAGCTCT ATCAACAGGC CCAGCACATC CTCAAGCAGC AGGTGCCGAT CACTCCGATT
GCCAACTCGA AGGTGTTCCA GCCAATGCGC CAGGAAGTGC AGGACTTCAA GATCAGTCCC
TTCGGCCTGA CACCGTTTTA TGGTGTCAGC CTGGGAACAG TGAAGTAA
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| Protein sequence | MGHTLFKPLL LTTALLACAP LAQAASTLVY CSEASPAGFD PSQYTSGTDF DASAETVFNR
LTQFKRGGTE VEPGLATRWD VSPDGLTYTF HLRDGVKFHT TDYFTPTRTF NADDVLFTFN
RLLDANHPFR KAYPSESPYF TDMGLNTTIK SVDKVDAQTV RFTLNNTDAA FVQNLAMSFA
SIQSAEYAGK LLKEGKADEL NQKPIGTGPF VFKRYQKDSQ IRYTGNTEYW KPEDVKIDNL
IFSISSDAAV RMQKLKAGEC QVSGYPRPQD IEEMKKDPKL KVLSQAGFNL GFLAYNVTHA
PLDQLKVHQA LDMAIDKPAI IKAVYQSAGQ LAENALPPGQ WSYDPTIKDA PYDPTKARQL
LKEAGVAPGT KIDLWAMTVQ RASNPNARMS AQMIQSDWDK IGIKANIVSY EWGEYIKRAK
AGEHDAMIYG WTGDNGDPDN WLGVLYSCAA VKGSNYAKWC DPAYDKLVQQ AKLTTSRDER
IKLYQQAQHI LKQQVPITPI ANSKVFQPMR QEVQDFKISP FGLTPFYGVS LGTVK
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