Gene PSPTO_4555 details

Gene Information

• Locus tag: PSPTO_4555
• ID: 1186238
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5145020
• End bp: 5145733
• Gene Length: 714 bp
• Protein Length: 237 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637395896
• Product: hypothetical protein
• Protein accession: NP_794308
• Protein GI: 28871689
• COG category: [S] Function unknown
• COG ID: [COG3471] Predicted periplasmic/secreted protein

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.734774
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCAATC TTCGCCCTGC TGCCACGCTC GTCGCGCTGG CCGCCGCCCT GTCCAGCCTG 
CCAGCGCTGG CTGAAGAAGC CCGCTACAAC CAGATTTCCC TGCGTGCCGA GGTCAATCAG 
GAAGTCCAGC GCGACCTGAT GCTCGTCACT CTTTATACCG AAGCGCAGGA CAGCGACCCG 
GCCAGACTGG CGGCGCAAAT CACTGAAACC CTGAACAAAG CGCTGGGTCA GGCGCGACAG 
GTCAAGGACG TGAAGATTCG CCAGGGCAGC CGCAACAGCT ATCCGGTCTA CGACGACAAA 
GGGCAGAAGA TCACCGGCTG GCGTGAACGC GCCGAGCTGC GCCTCGAAAG CGCGGACTTT 
GCGGTGCTGT CCAAACTGAC CGGCGAACTG CTGACAGACC TGAAAATGGG CGGCATGGAC 
TTTTCGATCT CGCCATCCAC CCGCAAGACC AGCGAAGACG CGCTGCTCAA GGACGCCGTA 
ACAGCCTTCA AGGCGCGTGC ACAGTTGGTG ACCGAGGCGC TGGGCGGCAA GGGCTACAAA 
CTGGTCAACC TGAACCTCAA CACCTCGGGC TACCCGCAGC CGTATCTGCG TGCGCCGGTC 
ATGATGATGG CAAAATCCTC GCGTGATGAG TCGGCACCGA CGCCCGATGT CGAAGCCGGC 
ACCAGCCAGG TCAGCGTTGC GGCCGATGGC GTGATCGAAG TCGCGATTCC TTGA 

 

Protein sequence

MFNLRPAATL VALAAALSSL PALAEEARYN QISLRAEVNQ EVQRDLMLVT LYTEAQDSDP 
ARLAAQITET LNKALGQARQ VKDVKIRQGS RNSYPVYDDK GQKITGWRER AELRLESADF 
AVLSKLTGEL LTDLKMGGMD FSISPSTRKT SEDALLKDAV TAFKARAQLV TEALGGKGYK 
LVNLNLNTSG YPQPYLRAPV MMMAKSSRDE SAPTPDVEAG TSQVSVAADG VIEVAIP