Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4550 |
Symbol | |
ID | 1186233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5140337 |
End bp | 5141086 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637395891 |
Product | transcriptional regulator, GntR family |
Protein accession | NP_794303 |
Protein GI | 28871684 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAATC AAAGCGCTCC ACCCCGCGCC CGTAGAAAAC ACCGCAGCCT CGCGCAGGAG TTGGTGACTG AGTTATCCGA GCGTATTCGC AGCGGTCAGC TCAAGCGTGG CGATAAACTG CCCACTGAAT CCGCGATCAT GGAAGAGCAG GGCGTCAGCC GCACGGTGGT GCGCGAGGCG ATCTCGCGCT TGCAGGCCTC CGGTCTGGTC GAGACCCGTC ACGGGATCGG TACCTTTGTG CTGGACACGC CTAGCCCTAG CGGCTTTCGC ATCGATCCGG CGACCATCGT CACCCTGCGT GATGTGCTGG CGATTCTTGA ATTGCGTATC AGCCTGGAAG TCGAGTCGGC GGGGCTGGCA GCTCAGCGTC GCAGTGATGA GCAGCTTGCA GCGATGCGCG CGGCGCTGGA CGCACTCAAC GAAAGCGCTG CGCATGCGAC GGATGCGGTG GCGTCGGACT TCCAGTTCCA TCTGCAGATT GCGCTGTCGA CCGGCAACCG CTACTTCACG GACATCATGA CCCATCTGGG CACCAGCATC ATTCCGCGTA CACGGCTGAA TTCGGCGCGT CTGGCCCATG ATGATCAACA GCACTACATG GATCGCCTGA GCCGCGAGCA CGAAGAAATC TTCGACGCCA TCGCCCGCCA AGACTCCGAC GCCGCCCGCG CTGCCATGCG CCTGCACCTG ACCAACAGTC GCGAACGCCT GCGCCACGCG CATGAAGAAG CAGAATCGCA GCGGGCCTGA
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Protein sequence | MENQSAPPRA RRKHRSLAQE LVTELSERIR SGQLKRGDKL PTESAIMEEQ GVSRTVVREA ISRLQASGLV ETRHGIGTFV LDTPSPSGFR IDPATIVTLR DVLAILELRI SLEVESAGLA AQRRSDEQLA AMRAALDALN ESAAHATDAV ASDFQFHLQI ALSTGNRYFT DIMTHLGTSI IPRTRLNSAR LAHDDQQHYM DRLSREHEEI FDAIARQDSD AARAAMRLHL TNSRERLRHA HEEAESQRA
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