| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4550 |
|---|
| Symbol | |
|---|
| ID | 1186233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5140337 |
|---|
| End bp | 5141086 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637395891 |
|---|
| Product | transcriptional regulator, GntR family |
|---|
| Protein accession | NP_794303 |
|---|
| Protein GI | 28871684 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAATC AAAGCGCTCC ACCCCGCGCC CGTAGAAAAC ACCGCAGCCT CGCGCAGGAG
TTGGTGACTG AGTTATCCGA GCGTATTCGC AGCGGTCAGC TCAAGCGTGG CGATAAACTG
CCCACTGAAT CCGCGATCAT GGAAGAGCAG GGCGTCAGCC GCACGGTGGT GCGCGAGGCG
ATCTCGCGCT TGCAGGCCTC CGGTCTGGTC GAGACCCGTC ACGGGATCGG TACCTTTGTG
CTGGACACGC CTAGCCCTAG CGGCTTTCGC ATCGATCCGG CGACCATCGT CACCCTGCGT
GATGTGCTGG CGATTCTTGA ATTGCGTATC AGCCTGGAAG TCGAGTCGGC GGGGCTGGCA
GCTCAGCGTC GCAGTGATGA GCAGCTTGCA GCGATGCGCG CGGCGCTGGA CGCACTCAAC
GAAAGCGCTG CGCATGCGAC GGATGCGGTG GCGTCGGACT TCCAGTTCCA TCTGCAGATT
GCGCTGTCGA CCGGCAACCG CTACTTCACG GACATCATGA CCCATCTGGG CACCAGCATC
ATTCCGCGTA CACGGCTGAA TTCGGCGCGT CTGGCCCATG ATGATCAACA GCACTACATG
GATCGCCTGA GCCGCGAGCA CGAAGAAATC TTCGACGCCA TCGCCCGCCA AGACTCCGAC
GCCGCCCGCG CTGCCATGCG CCTGCACCTG ACCAACAGTC GCGAACGCCT GCGCCACGCG
CATGAAGAAG CAGAATCGCA GCGGGCCTGA
|
|---|
| Protein sequence | MENQSAPPRA RRKHRSLAQE LVTELSERIR SGQLKRGDKL PTESAIMEEQ GVSRTVVREA
ISRLQASGLV ETRHGIGTFV LDTPSPSGFR IDPATIVTLR DVLAILELRI SLEVESAGLA
AQRRSDEQLA AMRAALDALN ESAAHATDAV ASDFQFHLQI ALSTGNRYFT DIMTHLGTSI
IPRTRLNSAR LAHDDQQHYM DRLSREHEEI FDAIARQDSD AARAAMRLHL TNSRERLRHA
HEEAESQRA
|
|---|
| |