| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4549 |
|---|
| Symbol | |
|---|
| ID | 1186232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5139135 |
|---|
| End bp | 5140046 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637395890 |
|---|
| Product | dihydrodipicolinate synthetase family protein |
|---|
| Protein accession | NP_794302 |
|---|
| Protein GI | 28871683 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.301477 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCAC AAGAACTGAA GTCCATCCTC TCTTCCGGTC TGCTGTCTTT CCCGGTTACC
GATTTCAATG CTCAGGGCGA TTTCCATCGC GCGGGCTACA TCAAACGCCT CGAGTGGCTG
GCTCCGTATG GCGCAAGCGC TCTGTTCGCT GCCGGCGGTA CAGGTGAGTT CTTCTCCCTG
GCAGCCAGCG AATACTCCGA AATCATCAAG ACTGCCGTTG ATACTTGCGC CACCAGCGTG
CCGATTCTGG CCGGTGTAGG CGGTGCAACC CGTCAGGCCA TCGAGTACGC TCAGGAAGCC
GAGCGCCTGG GGGCCAAAGG CCTGTTGCTG CTGCCGCACT ACCTGACCGA AGCCAGCCAG
GACGGCGTTG CCGCCCACGT TGAAGCCGTC TGCAAGTCGG TCAAGATTGG CGTGGTGGTC
TACAACCGTA ACGTTTGCCG CCTGACGCCA ACCCTGCTGG AACAACTGGC CGAGCGTTGC
CCTAACCTGA TCGGTTACAA GGATGGCCTG GGCGATATCG AACTGATGGT TTCGATCCGT
CGCCGCCTCG GTGATCGCTT CTCGTACCTG GGCGGCCTGC CGACTGCCGA AGTCTACGCC
GCTGCCTACA AGGCGCTGGG CGTGCCGGTC TACTCGTCTG CGGTATTCAA CTTTGTGCCG
AAACTGGCGA TGGACTTCTA CCACGCCATT GCCCGTGACG ATCATGAGGC GGTCGGCAAG
TACATCGATG ATTTCTTTCT GCCTTATCTG GAAATCCGCA ACCGCAAGGC TGGCTATGCC
GTGAGCATCG TCAAGGCCGG TGCAAAAATC GCTGGCTACG ATGCAGGCCC GGTTCGCGCG
CCACTGACTG ACCTGACCCC GGACGAGTGC GACATGCTCG CCGCACTGAT GGACAAGCAA
GGCAAGCAGT AA
|
|---|
| Protein sequence | MNPQELKSIL SSGLLSFPVT DFNAQGDFHR AGYIKRLEWL APYGASALFA AGGTGEFFSL
AASEYSEIIK TAVDTCATSV PILAGVGGAT RQAIEYAQEA ERLGAKGLLL LPHYLTEASQ
DGVAAHVEAV CKSVKIGVVV YNRNVCRLTP TLLEQLAERC PNLIGYKDGL GDIELMVSIR
RRLGDRFSYL GGLPTAEVYA AAYKALGVPV YSSAVFNFVP KLAMDFYHAI ARDDHEAVGK
YIDDFFLPYL EIRNRKAGYA VSIVKAGAKI AGYDAGPVRA PLTDLTPDEC DMLAALMDKQ
GKQ
|
|---|
| |