Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4548 |
Symbol | |
ID | 1186231 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5137584 |
End bp | 5138969 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637395889 |
Product | MFS transporter, phthalate permease family |
Protein accession | NP_794301 |
Protein GI | 28871682 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2271] Sugar phosphate permease |
TIGRFAM ID | [TIGR00893] d-galactonate transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0771862 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAAAGT CCAAGCCGAC GCACGTCCGC TATTTGATTT TGTTGATGCT GTTTCTGGTC ACCACGATCA ACTACGCCGA CCGTGCCACC ATCGCAATCG CTGGTTCCAG CATCCAGAAA GACCTCGGCA TCAGTGCTGT TACTCTGGGT TATATCTTCT CTGCATTCGG CTGGGCCTAC GTGGCCGGTC AGATTCCCGG TGGCTGGCTG CTCGACCGGT TCGGGTCGAA AAAAGTCTAC GCCATGAGCA TTTTCACCTG GTCGCTGTTC ACCTTGCTGC AGGGCTATGT GGGCGAGTTC GGTGTCTCCA CGGCGATCGT TGCGCTGTTC ATGCTGCGCT TTCTTGTCGG GCTGGCCGAA GCGCCTTCCT TCCCGGGTAA CGCGCGCATC GTGGCCGCCT GGTTTCCCAC CGCTGAGCGC GGTACAGCTT CGGCGATTTT CAACTCGGCG CAGTACTTTG CCACCGTGCT GTTCGCACCG CTGATGGGCT GGATCGTTTA CACCTACGGC TGGCAGCACG TGTTCGTGGT CATGGGCGCG ATCGGTATCG TGTTCTCGAT GATCTGGATG AAGGTCATTT ATGGCCCGCG CAATCACCCG ATGATCAACG AGGCCGAGTT CGAGCACATC TCCAGCAATG GTGCGCTGGT CGATCTGGAT CAGGACAAGG GCAAAGGCAA GGAAAAAGCC GCCAGCAGCG GACCGAAGTG GGACTACATT CGCCAGTTGC TGACCAACCG CATGATGCTC GGCATCTACC TGAGCCAGTA CTGCATCAAC GGTATTACCT ACTTCTTCCT GACCTGGTTC CCGGTGTACC TGGTTCAGGA GCGCGGCATG ACCATCCTCA AGGCTGGCAT CATCGCCTCC CTGCCAGCCA TCTGCGGCTT CATCGGTGGC GTACTGGGCG GGGTCATTTC CGACTACTTG CTGCGCAAAG GCCACTCGCT GACCTTCGCC CGCAAGGCAC CGATCATCGG CGGCCTGCTG CTCTCGACCT CGATCGTGAC CTGCAACTAT GTGGACGTGG AATGGGTGGT CGTGGGCTTC ATGGCCCTGG CATTCTTCGG CAAAGGCGTG GGCGCACTGG GCTGGGCTGT GATGTCCGAT GTTTCGCCCA AGCAGATTGC CGGTTTGAGT GGCGGCCTGT TCAACACCTT CGGTAACGTT GCATCGATCA CCACCCCGAT CGTGATTGGT TACATCATCA GCAGCACCGG CTCGTTCAAA TGGGCGCTGG TGTTCGTGGG CGCCAATGCG CTGCTGGCAG TGATCAGTTA CATTTTCATC GTGGGTGAAA TCAAGCGTGT GGAATTGAAA GAGCCGCCTG CCAAGGGGCC ATTGCTGAAC GACTCGGTCA GCGACCTTTC CGAAGCAAAA TCCTGA
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Protein sequence | MQKSKPTHVR YLILLMLFLV TTINYADRAT IAIAGSSIQK DLGISAVTLG YIFSAFGWAY VAGQIPGGWL LDRFGSKKVY AMSIFTWSLF TLLQGYVGEF GVSTAIVALF MLRFLVGLAE APSFPGNARI VAAWFPTAER GTASAIFNSA QYFATVLFAP LMGWIVYTYG WQHVFVVMGA IGIVFSMIWM KVIYGPRNHP MINEAEFEHI SSNGALVDLD QDKGKGKEKA ASSGPKWDYI RQLLTNRMML GIYLSQYCIN GITYFFLTWF PVYLVQERGM TILKAGIIAS LPAICGFIGG VLGGVISDYL LRKGHSLTFA RKAPIIGGLL LSTSIVTCNY VDVEWVVVGF MALAFFGKGV GALGWAVMSD VSPKQIAGLS GGLFNTFGNV ASITTPIVIG YIISSTGSFK WALVFVGANA LLAVISYIFI VGEIKRVELK EPPAKGPLLN DSVSDLSEAK S
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