| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4547 |
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| Symbol | garD |
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| ID | 1186230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5136020 |
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| End bp | 5137573 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395888 |
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| Product | D-galactarate dehydratase |
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| Protein accession | NP_794300 |
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| Protein GI | 28871681 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2721] Altronate dehydratase |
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| TIGRFAM ID | [TIGR03248] galactarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.457968 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTGA TTCAACATGC CGACTCTCCG CGCTACATCC GGCTGCACCC GCTGGATAAC
GTCGTGGTCG TGGTCAACGA CCAGGGTGTA CCGGCCGGAA CCGAATTCGA CAACGGCCTG
GTGACGGTCG ATAACGTGCC GCAGAGCCAC AAGGTCAGCA CCGTTGACCT GGCCGTGGGC
GAGGCCATTA TTCGTTATGG TCACACCATC GGTTACGCGC TGCAGCCGAT ACCGCGTGGC
AGTTGGGTCA GGGAAGACCA GTTGCGCATG CCGTCTGCGC CTGCGCTCGA CAGCTTGCCA
ATGTCCGATG CGGTGCCCGA GAAACAGGCA GCGCTGGAGG GTTATACCTT CGAGGGCTAC
CGCAACGCCG ACGGCACGGT GGGCACCCGC AACATTCTGG GGATCACCAC CACCGTGCAG
TGCGTGACCG GCGTGCTGGA CCATGCAGTC AAACGCATTC GTGACGAACT GCTGCCCAAA
TACCCTAACG TCGATGACGT AGTGGCCCTG ACCCACAGCT ACGGCTGCGG CGTGGCCATT
ACCGCCACCG ACGCTTACAT TCCGATCCGT ACCGTGCGCA ATCTGGCGCG CAACCCGAAC
CTGGGTGGCG AGGCGCTGGT GATCGGCCTG GGCTGCGAGA AATTGCAGGC CGGGCAGGTC
ATGCATGAGG ACGACAGCTC GGTGGACCTG AGCGAGCCGT GGTTGTATCG GCTTCAGGAT
TCCAGCCACG GCTTCAACGA AATGATCGAG CAGATCATGG AACTGGCCGA GACGCGCCTC
AAGAAACTGG ATGTGCGTCG CCGCGAAACG GTTCCGGCCT CCGAGCTGAT TCTGGGCATG
CAGTGCGGCG GCAGTGATGC GTTCTCCGGC ATTACCGCCA ACCCGGCGCT GGGCTATGCC
TCGGATCTGC TGTTGCGTGC AGGGGCGACG GTGATGTTTT CCGAAGTGAC CGAGGTGCGC
GATGCCATTT ACTTGCTGAC CTCCCGCGCG CAGGATCAGG ACGTCGCGCA GGCGCTGGTA
CGGGAAATGG ACTGGTACGA CCGTTACCTG GCCAAAGGTG AGGCGGATCG CAGCGCCAAC
ACCACGCCCG GCAACAAGAA GGGCGGGTTG TCGAACATTG TCGAGAAGTC CCTGGGGTCG
ATCGTCAAAT CCGGCAGCAG CGCCATCAAT GGCGTGCTTG GCCCGGGGGA GCGCGTCAAC
AGCAAGGGTT TGATCTTCTG CGCCACGCCC GCCAGTGACT TTGTCTGCGG TACGCTGCAA
CTGGCCGCCG GGATGAACCT GCACGTGTTC ACCACCGGGC GCGGCACTCC GTATGGTCTG
GCGATGGCGC CGGTGGTGAA GGTCTCGACC CGCACCGAAC TGGCCCAGCG CTGGCCTGAC
CTGATCGATA TCGACGCCGG ACGCATCGCC ACGGGGCGTG CGAGCATCGA AGATCTCGGC
TGGGAGCTGT TTCACTTCTA CCTGGATGTG GCCAGCGGCA AGAAAAAGAC CTGGACCGAG
CACTACCGTT TGCACAACGA CATCACCCTG TTCAACCCGG CACCGATCAC CTGA
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| Protein sequence | MNLIQHADSP RYIRLHPLDN VVVVVNDQGV PAGTEFDNGL VTVDNVPQSH KVSTVDLAVG
EAIIRYGHTI GYALQPIPRG SWVREDQLRM PSAPALDSLP MSDAVPEKQA ALEGYTFEGY
RNADGTVGTR NILGITTTVQ CVTGVLDHAV KRIRDELLPK YPNVDDVVAL THSYGCGVAI
TATDAYIPIR TVRNLARNPN LGGEALVIGL GCEKLQAGQV MHEDDSSVDL SEPWLYRLQD
SSHGFNEMIE QIMELAETRL KKLDVRRRET VPASELILGM QCGGSDAFSG ITANPALGYA
SDLLLRAGAT VMFSEVTEVR DAIYLLTSRA QDQDVAQALV REMDWYDRYL AKGEADRSAN
TTPGNKKGGL SNIVEKSLGS IVKSGSSAIN GVLGPGERVN SKGLIFCATP ASDFVCGTLQ
LAAGMNLHVF TTGRGTPYGL AMAPVVKVST RTELAQRWPD LIDIDAGRIA TGRASIEDLG
WELFHFYLDV ASGKKKTWTE HYRLHNDITL FNPAPIT
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