Gene PSPTO_4535 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4535 
Symbol 
ID1186218 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp5122936 
End bp5123916 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content63% 
IMG OID637395876 
Productpeptide ABC transporter, ATP-binding protein 
Protein accessionNP_794288 
Protein GI28871669 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase
[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGGCC CCAGCCTGTT GAACGTCAAC GATCTGGTCG TACGCTTTGC AGCGCCCGGC 
TCGGGTTTCA CGGGCCTGAA CAAGCGCTGG GTCCATGCCG TCAACGGTGT GTCACTGAGC 
ATTTCAGCGG GCGAAACGCT GGGCCTGGTC GGCGAGTCGG GCAGCGGCAA GAGCACCTTG 
GGCCGCGCGA TTCTGCGCCT GAACGACATT ACCTCAGGGC AAATCGTCTT CGACGATGTT 
GACGTGGCGC AGGGCAGCGG CATCAATTTA CAGCGTCTGC GCAGTGAAAC GGCGATGGTC 
TTTCAGGACC CGTCTTCCTC GCTCAACCCG CGCATGACCG TCGGTGCCAC GCTGGCCGAG 
GTGCTTAAAG TGCAGCGCAA GGTCGCGGCA TCCGACATTC CTGCGCGGGT CATCGAGTTA 
CTCGACATGG TCGGCCTGCG CGCCGAGTTT GCCGAGCGCA AGCCCGGTGC ATTGAGCGGC 
GGGCAGTGTC AGCGTGTCGG CATTGCCCGC GCACTGGCCA TCGAGCCGCG GCTGATCATT 
GCCGACGAAT GCGTGGCAGC GCTGGACGTG TCGATTCAGG GGCAGATCAT CAACCTGCTG 
CTGGAACTGC GTGAACGCAT GAACCTGGCG ATTCTGTTCA TCGCCCACGA CCTGGCCATT 
GTGCGGCGGC TGTGCGACCG GGTGGCGGTG ATGTATCTGG GCAAGATCGT TGAAGAAGGC 
CCGGTCGAAG CCGTCTTTCT CAGGCCGCGC CATCCCTACA CCGCTGCGCT GATCCAGGCG 
ATCCCGGAGA TTGATCCGGA TCGCCCATTG CCCAGCGAGC CGTTGCAGGG CGAGCCGCCA 
AGCCCCCTGC ATCTGCCTGA TGGCTGCGCG TTTCATCCGC GCTGCCGTTT TGCCCGGCCC 
ACCTGTTGCA GCGTTGCGCC GCCGACCCGC TATGTCGGTG AACAACGCTA TGACTGCGTA 
CTCGATGCGC CCGTTTTTTG A
 
Protein sequence
MSGPSLLNVN DLVVRFAAPG SGFTGLNKRW VHAVNGVSLS ISAGETLGLV GESGSGKSTL 
GRAILRLNDI TSGQIVFDDV DVAQGSGINL QRLRSETAMV FQDPSSSLNP RMTVGATLAE 
VLKVQRKVAA SDIPARVIEL LDMVGLRAEF AERKPGALSG GQCQRVGIAR ALAIEPRLII 
ADECVAALDV SIQGQIINLL LELRERMNLA ILFIAHDLAI VRRLCDRVAV MYLGKIVEEG 
PVEAVFLRPR HPYTAALIQA IPEIDPDRPL PSEPLQGEPP SPLHLPDGCA FHPRCRFARP 
TCCSVAPPTR YVGEQRYDCV LDAPVF