| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4494 |
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| Symbol | tpiA |
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| ID | 1186177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5061980 |
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| End bp | 5062735 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395835 |
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| Product | triosephosphate isomerase |
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| Protein accession | NP_794247 |
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| Protein GI | 28871628 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0149] Triosephosphate isomerase |
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| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.321001 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGTCGCC CAATGGTAGC TGGTAACTGG AAAATGCACG GTACCCGCGC CAGCGTCGCT
GAGCTGATCG AGGGTTTGGT CAAGCAGGCG TTGCCTGGCA GCGTCGATAT CGCCGTAATG
CCTGCAAGCC TGTTTACCAG TCGAGTGATC GAGGGCCTTC AGGGTACGTC GATCATTGTC
GGTGCGCAGG ATGCAGCCAT TCAGGCTGAG CAGGGCGCAC TGACCGGCGA AATCGCATCG
AGCCAATTGG CTGATGCCGG TTGCAAGCTG GTACTCGTCG GGCACTCGGA GCGTCGTCAG
CTGATTGGCG AGCAGGATGA GGTGCTCAAC AAGAAGTTCG CAGCGATACA GGCAAGCGGT
CTTACCCCTG TGCTTTGCAT AGGCGAGACG CTTGAAGAGC GCAAGGCAGG GCAAACGCTT
GAAGTTGTCG GGCGTCAGCT TGACAGCGTC ATTGCAGAGT TTGGTATTGG TGCGCTGGTC
AATGCAGTAA TTGCCTACGA GCCAGTCTGG GCCATCGGCA CCGGATTGAC CGCTTCGCCT
CAAGAGGCGC AGGAGGTGCA CGCAGCAATT CGTGCGCAAC TGGCAAAAGA GAATGCCGAA
GTCGCACAAG GCGTGCGACT TCTCTATGGC GGCAGCGTGA AGGCGGCCAA TGCGGTCGAG
CTTTTCAGCA TGCCGGATAT CGATGGGGGG CTCATTGGTG GAGCGTCCCT GAATGCAGAT
GAGTTCGGTG CGATCTGTCG CGCCGCGGGA AACTGA
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| Protein sequence | MRRPMVAGNW KMHGTRASVA ELIEGLVKQA LPGSVDIAVM PASLFTSRVI EGLQGTSIIV
GAQDAAIQAE QGALTGEIAS SQLADAGCKL VLVGHSERRQ LIGEQDEVLN KKFAAIQASG
LTPVLCIGET LEERKAGQTL EVVGRQLDSV IAEFGIGALV NAVIAYEPVW AIGTGLTASP
QEAQEVHAAI RAQLAKENAE VAQGVRLLYG GSVKAANAVE LFSMPDIDGG LIGGASLNAD
EFGAICRAAG N
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