| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4491 |
|---|
| Symbol | nusA |
|---|
| ID | 1186172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5059161 |
|---|
| End bp | 5060642 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637395830 |
|---|
| Product | N utilization substance protein A |
|---|
| Protein accession | NP_794244 |
|---|
| Protein GI | 28871625 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.119546 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG AAGTACTGCT GGTTGTTGAG TCGGTGTCCA ATGAAAAGGG CGTTCCGGCA
AGTGTAATTT TTGAAGCGCT GGAGCTGGCT CTGGCCACTG CTACCAAGAA ACGTTTTGAA
GACGAAGTTG AACTGCGTGT AGAGATCAAC CGCCAAACAG GCAACTACGA GACTTTCCGT
CGCTGGACAG TCGTCGAAGA CGAAGATCTG GACGATCCTG CTTACGAGCT GGCCGTCGAT
CAGGCTCAGG CTAAAAAGCC TGGTGCCGTT GCAGGCGACC TGATCGAAGA GAAAATCGAT
TCCATCGAAT TTGGTCGTAT TGCTGCACAG ACCGCAAAAC AGGTCATCGT GCAGAAAGTT
CGTGAAGCCG AGCGTGCTCA GGTAGTCGAT GCCTACCGTG AGCGTCTGGG TGAAATCATT
TCTGGTACTG TTAAAAAGGT TACACGTGAC AATGTCATCG TTGATCTGGG TAACAATGCC
GAAGCCTTGC TTGCTCGTGA AGACATCATT TCCCGGGAAA CTTTCCGGGT CGGTGTTCGC
GTCCGTGCTC TGCTGAAGGA AATTCGTACT GAAAACCGTG GCCCTCAGCT GATTCTGTCG
CGTACTGCGC CAGAGATGCT GATCGAGCTT TTCCGCATTG AAGTGCCGGA AATTGCCGAA
GGTCTCATCG AGGTGATGGC TGCCTCTCGT GACCCGGGCT CTCGTGCGAA AATCGCTGTT
CGCTCCAAGG ACAAACGAAT CGATCCGCAA GGTGCCTGTA TCGGCATGCG CGGTTCGCGA
GTTCAGGCTG TTTCCGGCGA GCTGGGTGGC GAGCGTGTGG ATATCGTGCT TTGGGACGAT
AACCCTGCGC AGTTCGTGAT CAACGCAATG TCCCCTGCAG AAGTAGCTGC AATCATCGTA
GATGAAGACG CTCATGCAAT GGACATCGCG GTAGGCGCGG ACAACCTGGC CCAGGCTATT
GGTCGTGGCG GTCAGAACGT TCGTCTGGCC AGTCAGTTGA CTGGCTGGAC CCTGAACGTA
ATGACCGAAT CGGACATCCA GGCCAAGCAG CAAGCTGAAA CCGGTGACAT CCTGCGCAAC
TTCATCGAAG AGCTCGAAGT CGATGAAGAA CTGGCTCAGG TGCTGGTTGA TGAAGGCTTC
ACCAGCCTGG AAGAGATTGC CTACGTACCG TTGGAAGAAA TGCTCAACAT CGACGGCTTT
GACGAAGATA TCGTCAACGA GCTTCGCGCT CGTGCCAAGG ATCGTTTGTT GACTAAAGCC
ATCGCTACAG AGGAAAAGCT GGCAGACGCC CATCCGGCCG AAGACCTGCT CTCGCTTGAG
GGTATGGACA AGGATTTGGC GATGGAACTG GCGGTGCGCG GCGTAGTTAC CCGCGAAGAC
CTGGCCGAGC AGTCTATAGA TGACCTGCTC GACATCGACG GCATTGACGA TGATCGTGCC
GGCAAGTTGA TCATGGCCGC CCGAGCCCAC TGGTTCGAGT AA
|
|---|
| Protein sequence | MSKEVLLVVE SVSNEKGVPA SVIFEALELA LATATKKRFE DEVELRVEIN RQTGNYETFR
RWTVVEDEDL DDPAYELAVD QAQAKKPGAV AGDLIEEKID SIEFGRIAAQ TAKQVIVQKV
REAERAQVVD AYRERLGEII SGTVKKVTRD NVIVDLGNNA EALLAREDII SRETFRVGVR
VRALLKEIRT ENRGPQLILS RTAPEMLIEL FRIEVPEIAE GLIEVMAASR DPGSRAKIAV
RSKDKRIDPQ GACIGMRGSR VQAVSGELGG ERVDIVLWDD NPAQFVINAM SPAEVAAIIV
DEDAHAMDIA VGADNLAQAI GRGGQNVRLA SQLTGWTLNV MTESDIQAKQ QAETGDILRN
FIEELEVDEE LAQVLVDEGF TSLEEIAYVP LEEMLNIDGF DEDIVNELRA RAKDRLLTKA
IATEEKLADA HPAEDLLSLE GMDKDLAMEL AVRGVVTRED LAEQSIDDLL DIDGIDDDRA
GKLIMAARAH WFE
|
|---|
| |