Gene PSPTO_4477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4477 
Symbol 
ID1186158 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp5041338 
End bp5042369 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content63% 
IMG OID637395817 
ProductK+-dependent Na+/Ca+ exchanger related-protein 
Protein accessionNP_794231 
Protein GI28871612 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0530] Ca2+/Na+ antiporter 
TIGRFAM ID[TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCAGTG GTTTGCTGTT GCTGCTGATC GGGGCCGAAC TGTCGGTGCG CGCTGCCGTA 
CACCTGGCGG CGATTTTCAA GGTTCGGCCA CTGATCATCG GCCTGACTGT CGTGGCGATG 
GGCACCAGCG CGCCTCAAAT GGCCGTCAGC CTGCAAGCCG CGTTTTCCGA CAACACCGAC 
ATTGCCGTGG GCAGCGTGAT CGGCGGCAAC ATCTTCAATG TGCTGGTCAT CCTCGGGCTG 
TGTTCGCTGA TCATTCCGTT GCGCGTCGCG CGTCAGGTAT TGCACATCGA CATCCCGCTG 
ATGATCGGCG CCTGCCTGCT GGCCATCGGC CTGTCGTGGA GCGGCGAGTT CAGCAAATTT 
GACGGTGCGC TGCTTCTGGT CGCGCTGCTG GTCTGTCTGG TCATCATCAT CCGCCAGGGA 
GGCCAAAGCC CACGTCACGG GCGTGCCGCT ACAAGCGGAA AACCGCGCAC CTTCACGCGC 
ATGGCCATGC TGGCTGCAGG CCTGCTGATG CTCGTCGCGG GCGGGCACTT GCTGGTCGAT 
GCCTCGGTGG TTATCGCCAT CCACCTGGGG CTTTCCGAGC GTATTATCGG CCTGACCGTC 
ATTGCCATCG GCACCTCACT GCCCGCGCTG ATGACTTCCT TGATCGCAGC ACTGCGCGGC 
GAGCGCGATA TCGCGGTGGG CAATGTGATC GGCAGCAACC TGTTTAACCT GCTGGGCGTG 
CTGGGGCTCA CCGCGCTGGT CGCGCCCACG CCGCTGACCA TCTCGCCGAA CGCGCTGGTT 
TTCGATCTGC CGATCATGCT GGGCGTTTCG CTGCTGTGCG TGCCGCTGTT CTATTCCGGC 
TACCGGATGG ACCGTATCGA AGGCTTGCTG TTGCTGGCGT TGTACCTGAC CTACGGGCTG 
CATATCCTGG CGATCAGCAC CGGCATGGCG CTGGCCGAAA GGCTCGAAGG CTTGATGCTG 
ACTTTCGCTT TGCCTGTGCT GGGAATTATC GTCGCCTGGG GCACTGTTCG CGCCTGGCGA 
CGCCAGCACT GA
 
Protein sequence
MLSGLLLLLI GAELSVRAAV HLAAIFKVRP LIIGLTVVAM GTSAPQMAVS LQAAFSDNTD 
IAVGSVIGGN IFNVLVILGL CSLIIPLRVA RQVLHIDIPL MIGACLLAIG LSWSGEFSKF 
DGALLLVALL VCLVIIIRQG GQSPRHGRAA TSGKPRTFTR MAMLAAGLLM LVAGGHLLVD 
ASVVIAIHLG LSERIIGLTV IAIGTSLPAL MTSLIAALRG ERDIAVGNVI GSNLFNLLGV 
LGLTALVAPT PLTISPNALV FDLPIMLGVS LLCVPLFYSG YRMDRIEGLL LLALYLTYGL 
HILAISTGMA LAERLEGLML TFALPVLGII VAWGTVRAWR RQH