Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4468 |
Symbol | cafA |
ID | 1186149 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5032433 |
End bp | 5033890 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637395808 |
Product | ribonuclease G |
Protein accession | NP_794222 |
Protein GI | 28871603 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.533978 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGAAG AGATTCTGAT CAACATCACC CCGATGGAAT CGCGGGTGGC AGTGGTAGAA AACGGTGTAC TGCAAGAGGT GCACGTCGAA CGCACCCAGC GTCGCGGCAT TGTCGGCAAC ATCTACAAAG GCAAGGTGGT GCGGGTGTTG CCTGGCATGC AGGCGGCGTT CATCGACATC GGTCTGGATC GCGCCGCATT CATTCATGCA TCGGAAATTT CCATGCGCGA AGGGCCTGCC GTCGAGAGCA TTGCGTCGCT GGTGCATGAC GGCCAGAGTC TGGTGGTGCA GGTCACCAAA GACCCGATTG GCAGCAAAGG CGCACGCCTG ACCACGCAGC TGTCGATTCC GTCGCGGTAT CTGGTGTACA TGCCACGTAC TGCCCACGTC GGGATTTCTC TGAAGATCGA AGACGAGGCC GAGCGGGAGC GACTGAAAAA AGTTGTCAGC GATTGTGTCG CCCAGGAAGG CATCAAAGAG GCCGGTGGCT TCATTTTGCG CACCGCTGCG GAAGGCGCCG GTGCCGACGA AATCCTCATG GACATTCGTT ATCTGCGCAG GCTCTGGGAC CAGATCGGCG ATCAGATCAA GACCGTCAGC CCACCCACCG TGATCTACGA AGACCTGGGC CTGGCATTGC GTACCTTGCG TGACCTGGTC AGCCCGCGAA TCGAAAAAAT CCGCATTGAC TCACGGGAGA CGTTTCAGAA AACCACACAG TTCGTGGCTG AACTGATGCC TGAAATCGCC GACCGTCTTG AGCATTACCC GGGCGAGCGG CCGATTTTCG ATCTGTACGG CGTCGAAGAC GAAATCCAGA AAGCCCTGGA GCGCAAGGTG CCGCTCAAGT CCGGCGGTTA TCTGGTGATC GATCCGGCCG AGGCGATGAG CACCATCGAC GTCAATACCG GTGCGTTTGT CGGGCATCGC AACCTGGAAG AAACCATTTT CAAGACCAAC CTGGAGGCGG CGACAGCCAT CGCCCGCCAG CTGCGTCTGC GCAATCTGGG CGGCATCATC ATTATCGATT TCATCGACAT GGAAGACGGT GAACACCAGC GTCAGGTGCT GCGCACGCTG GAAAAACAGC TGGAGCGCGA TCACGCCAAG ACCAACATCA TCGGTATTAC CGAGCTGGGT CTGGTGCAAA TGACGCGCAA GCGCACCCGC GAAAGTCTCG AGCAGGTGCT GTGCGAGCCC TGCCATTGCT GCGTGGGCCG GGGCAAGCTG AAAACCCCGG AGACCATCTG TTACGAAATC TTCCGGGAAA TCCTGCGCGA AGCCAGGGCC TATCAGGCAG TGGGTTATCG CGTTCTGGCC AATCAGCGCG TGGTGGACCG CTTGCTCGAC GAAGAGTCGG GCAACGTGGC TGAGCTGGAG AGCTTTATTG GCCGGACCAT CCGTTTTCAG GTAGAAACCA TGTACTCGCA GGAACAATAC GACGTGGTGC TGCTCTGA
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Protein sequence | MSEEILINIT PMESRVAVVE NGVLQEVHVE RTQRRGIVGN IYKGKVVRVL PGMQAAFIDI GLDRAAFIHA SEISMREGPA VESIASLVHD GQSLVVQVTK DPIGSKGARL TTQLSIPSRY LVYMPRTAHV GISLKIEDEA ERERLKKVVS DCVAQEGIKE AGGFILRTAA EGAGADEILM DIRYLRRLWD QIGDQIKTVS PPTVIYEDLG LALRTLRDLV SPRIEKIRID SRETFQKTTQ FVAELMPEIA DRLEHYPGER PIFDLYGVED EIQKALERKV PLKSGGYLVI DPAEAMSTID VNTGAFVGHR NLEETIFKTN LEAATAIARQ LRLRNLGGII IIDFIDMEDG EHQRQVLRTL EKQLERDHAK TNIIGITELG LVQMTRKRTR ESLEQVLCEP CHCCVGRGKL KTPETICYEI FREILREARA YQAVGYRVLA NQRVVDRLLD EESGNVAELE SFIGRTIRFQ VETMYSQEQY DVVLL
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