| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4467 |
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| Symbol | |
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| ID | 1186148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5028436 |
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| End bp | 5032251 |
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| Gene Length | 3816 bp |
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| Protein Length | 1271 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395807 |
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| Product | hypothetical protein |
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| Protein accession | NP_794221 |
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| Protein GI | 28871602 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3164] Predicted membrane protein |
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| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00502079 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGCGTC TTTCGCGTGC CGTTGCAACC CTGACGCGCT GGAGCCTGAG CCTCTGCGCG
CTGATTCTGG TGCTCGCGGC GCTGTACGTC AGCCTCGGCC GTCAACTGGC GCCGCTGGTT
GCCGAATACC GCGTCGATGT AGAAACCCGA GCCAGCAGCG CATTGGGCAT ACCGCTGAGC
ATTGGCAGCC TGGAAGGCAG CTGGAGCCGC TTTGCCCCGG TATTGCTGGC CCACGACGTC
ATGGTCGGTG AGGGCGCCAA TGCCCTGCGT CTGGATCGTG TGCGGGTTGT TCCTGATCTC
TGGGCAAGCC TGTTGGCGCG TCAAGTGCGC ATCGCGCACC TTGAAGTAGA CGGTCTGCAG
TTCACGATCA AGCAGGATCA AGAAGGCGGC TGGGCCGTGC AGGGCTTGCC GCTGCGTAAC
GACACCCCGT TAGACCCGGG GCAATTGCTC AATCAGATGC AAATGGTGTC GCACCTTTCG
CTGCTCGACA GCCAGGTGAC GGTGCAACCG CTCGACGCCG CGCCACTGAC CCTGACCTAC
GTCAACCTCA GTCTGACCAC CGGCAGCTAT CACCAGCGTC TGGACGCGCG CCTGACCCTG
CCGGATGGCC AGCCGTTTGC GCTGAATGTG CGCTCGCGTA TCCAGGCCAG TCAGTGGAAA
GACGGCGAAG CGGATTTCTA CGCCAGCCTG CCGCAAAGCG ACTGGGCCAA ATGGCTGCCG
AAAAGCGCCA CACGTGAATG GACGCTGTCC AGGCTGCAAG CCGGTGGCGA CCTGTGGATG
AGCTGGGGCA AGGGCACCGT GCAAAGCGCA ACTGCACGCC TGAATGCCCC GCAGATCAAA
GGCGTCTACG CCGATCGCAA GCCGTCCACA ATCGATAATC TGGCGCTCAA CGCCTGGTTC
GCGCGCACGG CGACAGGCTT TGACCTGAAC CTTGATTCAC TGGCGATGAA CCTGGGCAGC
GACCGCTGGG AAAGCCGCCT GCAACTGACC CAGACCGCTG CAACGCCTGA TAGCGAAGAG
CTTTGGCATG TGCAGGCTGA CCGCCTGGAC CTGACACCGC TCACGCCACT GATCGACTCC
CTCGCGCCAC TGCCTGAGAA GGCAATGGCG GTGGTCGACG GGCTCAAGGT GACGGGCGGG
CTTCGCAACG TATTGCTCGA TTACCGCCCG CAGGCCACCG GCGACAAGCG CTTGGGTTTT
GCCGCCAATC TGGACAAGGT CGGTTTCAAT GCCTATCGCG GCGCACCGGC GGCCGGGAAT
GTCAGCGGCG CGATCAGCGG CGATCTGGGG CAGGGCGAGC TGAGGCTCGC TACTGACGAT
TTCATGCTGC ACCTGGACCC GATCTTCGCC AAGCCGTGGC GCTATCAGAA AGCCAATGCC
CGCCTGACCT GGAAGCTGGA TGATCAGGCG TTCACCCTGA TCGCGCCGTA TATCAAGGTG
CTTGGCGATG AAGGCAAGAT CGCGGCAGAC TTCCTGATCA GAATTCACCT CAGCCACGAT
CAGGAAGACT ACATGGACCT GCGGGTTGGC ATGGTCGATG GCGATGGTCG CTACACCAGC
AAATACCTGC CTGCCGCGCT CAGCCCGGAA CTCGATCACT GGCTGCGCAC TGCCGTGGTG
AGTGGCGCGG TCAAGCAAGG CTTTTTCCAG TACCAGGGTT CGTTGAACAA GAATTCGCCC
GACACTGCGC ATGTCATCAG TCTGTTTTTC GATGTCAGCA ATGCAACGCT GGCGTTCCAG
CCGGGCTGGC CTTCGCTGAC CGGCGTGGAC GGCAAGGTGT ACGTTGAAAA CAGCGGCGTG
CGGGTCAAGG CAAGCAAGGG GCAGCTGTTC GACACCAAAG TCAGCAATGT GCTGGTCAAC
ATTCCCCACG TGCCGTCGGG TCAGGACAGC CACCTGCTGG TGGACGGTAA CTTTTCCGGA
AGCCTGGTCG ATGGGCTGAA GATTCTTCAG CAAGCGCCCA TCGGCACGGG CAGCACGTTT
GCCGGCTGGC AGGGCGAAGG CCCGCTGGAC GGCAAGCTCA AGCTGGATAT TCCGCTGGCA
AAGGGCGTCG AGCCAAAGGT CGTGGTGGAT TTCAGCACCG ACAATGCACG TCTGAAGCTG
GCAGATCCGG TGCTGGAACT GACCCGGCTC AAGGGTGACT TCCGTTTTGA CAGCAACAGT
GGGTTAAGCG GCAAAGGCAT CAAGGCACAA GCGTTCGATC GTCCGGTGAC GGCTGAAATT
GCGGCCGAGG GCAAGCCGGG TGCCAATGTC ACGCGCATCA CGGCAAACGG GCAAATCACC
GTTAAGAAAC TGACGGACTG GCTGAGCGTC ACCCAGCCGG TACCAGCGTC GGGTGACTTG
CCTTATCAAC TGCAACTGAT TCTGGACAGC AAAGACAGCC CGTTGCTGAT CAACTCCACG
CTCAAGGGTG TGGCAATCGA TCTGCCCGCG CCGTTTGGCA AAGCCGCCGA TCAGGAGCGC
CCGAGCGAAT TTCGCATGAC CCTGCAAGGG CCAGAGCGCA GGCTGGGTGT GGCTTACGAC
AACCTGGCGA ACTTCGCTTT CGCAGCGCCG GGTGGCAAGT TTGCCGACGG TCGCGGCGAA
CTGTATCTGG GGCGCGGCGG GGCCGTCGTG CCAGACGCCA AGGGCTTGCG GATCCGCGGT
GAGTTGTCCG AACTGGACAT CGCCCCGTGG CAGGCGCTGG CAGGGCGATA CTCCAGCAAT
GATCCGGGTG ACAGTGCAAA ACAGCTGCTC AACAGCGTGG ACCTGCAGAT TGGCAAGCTG
ACCGCGATGG GCACAACGCT CAATGAGGTG CGTGTTCAAT TGCAGCGCAG CGCTGCGGCC
TGGGCCTTGT CGCTGGACAG TGCGCTGGCC AAGGGCACGG CAACGCTGCC AGACGCCAAA
GCTGCGCCAA TCGGTATCAA CATGGCGTAT GTGCGACTGC CTGCGCCCGA TCCGAATGCC
GCCGTAGTCG AAAACGCGCC TGACCCGCTG GCTGACGTTG ATCCGCGCAA GATCCCGGCG
CTGGATATCA AGATCTCGCA ACTGTTTCAG GGCGACCAGT TATTGGGTGC CTGGGCGTTG
AAGATTCGTC CGACGCCCAC CGGAATGCGC ATGTCTGACC TGAGCCTGGG GCTCAAAGGC
ATCCTGCTGG AAGGCGACGG TGCCTGGGAA GGTGCGCCGG GTGCCAGCAG CAGCTGGTTC
AAAGGGCGTC TGGCCGGCAA GAATCTGGAG GACGTACTCA AAGCCTGGAA CTTCGCTCCG
ACCGTCACCA GCGAAAGCTT TGAAATGAAC GTCGACGGGC GCTGGCCCGG CTCACCCGCG
TGGGTAGGGC TCAAGCGTTA TTCCGGCAGC CTCGATGCCA CGTTGAACAG AGGTCAGTTT
GTCGAAGTGG AGGGCGGCGC CCAGGCACTG CGTGTATTCG GGCTGCTCAA CTTCAACTCC
ATTGGTCGCC GTTTACGTCT GGACTTCTCT GACCTGCTCG GTAAAGGCCT CAGCTATGAC
CGGGTCAAAG GGCTGCTGGT GGCCAGCGAC GGCGTTTACG TGACGCGCAA CCCGATCACG
CTGACCGGGC CGTCCAGTAA TCTGGAACTC AACGGTACGC TGGACATGGT TCGCGACCGG
GTCGATGCCA AGCTGCTGGT GACCTTGCCG GTGACCAACA ACCTGCCTAT CGCGGCGTTG
ATTGTCGGCG CGCCGGCCAT TGGCGGCGCG CTGTTTCTGG TCGACAAGCT GCTGGGCGAC
CGGGTTGCCC GCTTCGCCAG CGTGCAGTAC AAGGTCGAAG GCCCGTGGAA AGAGCCGAAG
ATCACCTTCG ACAAGCCATT TGAAAAGCCC CAGTAG
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| Protein sequence | MGRLSRAVAT LTRWSLSLCA LILVLAALYV SLGRQLAPLV AEYRVDVETR ASSALGIPLS
IGSLEGSWSR FAPVLLAHDV MVGEGANALR LDRVRVVPDL WASLLARQVR IAHLEVDGLQ
FTIKQDQEGG WAVQGLPLRN DTPLDPGQLL NQMQMVSHLS LLDSQVTVQP LDAAPLTLTY
VNLSLTTGSY HQRLDARLTL PDGQPFALNV RSRIQASQWK DGEADFYASL PQSDWAKWLP
KSATREWTLS RLQAGGDLWM SWGKGTVQSA TARLNAPQIK GVYADRKPST IDNLALNAWF
ARTATGFDLN LDSLAMNLGS DRWESRLQLT QTAATPDSEE LWHVQADRLD LTPLTPLIDS
LAPLPEKAMA VVDGLKVTGG LRNVLLDYRP QATGDKRLGF AANLDKVGFN AYRGAPAAGN
VSGAISGDLG QGELRLATDD FMLHLDPIFA KPWRYQKANA RLTWKLDDQA FTLIAPYIKV
LGDEGKIAAD FLIRIHLSHD QEDYMDLRVG MVDGDGRYTS KYLPAALSPE LDHWLRTAVV
SGAVKQGFFQ YQGSLNKNSP DTAHVISLFF DVSNATLAFQ PGWPSLTGVD GKVYVENSGV
RVKASKGQLF DTKVSNVLVN IPHVPSGQDS HLLVDGNFSG SLVDGLKILQ QAPIGTGSTF
AGWQGEGPLD GKLKLDIPLA KGVEPKVVVD FSTDNARLKL ADPVLELTRL KGDFRFDSNS
GLSGKGIKAQ AFDRPVTAEI AAEGKPGANV TRITANGQIT VKKLTDWLSV TQPVPASGDL
PYQLQLILDS KDSPLLINST LKGVAIDLPA PFGKAADQER PSEFRMTLQG PERRLGVAYD
NLANFAFAAP GGKFADGRGE LYLGRGGAVV PDAKGLRIRG ELSELDIAPW QALAGRYSSN
DPGDSAKQLL NSVDLQIGKL TAMGTTLNEV RVQLQRSAAA WALSLDSALA KGTATLPDAK
AAPIGINMAY VRLPAPDPNA AVVENAPDPL ADVDPRKIPA LDIKISQLFQ GDQLLGAWAL
KIRPTPTGMR MSDLSLGLKG ILLEGDGAWE GAPGASSSWF KGRLAGKNLE DVLKAWNFAP
TVTSESFEMN VDGRWPGSPA WVGLKRYSGS LDATLNRGQF VEVEGGAQAL RVFGLLNFNS
IGRRLRLDFS DLLGKGLSYD RVKGLLVASD GVYVTRNPIT LTGPSSNLEL NGTLDMVRDR
VDAKLLVTLP VTNNLPIAAL IVGAPAIGGA LFLVDKLLGD RVARFASVQY KVEGPWKEPK
ITFDKPFEKP Q
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