| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4461 |
|---|
| Symbol | fumC-2 |
|---|
| ID | 1186142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5022007 |
|---|
| End bp | 5023383 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637395801 |
|---|
| Product | fumarate hydratase, class II |
|---|
| Protein accession | NP_794215 |
|---|
| Protein GI | 28871596 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0114] Fumarase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATA CCCGTATCGA ACGCGACAGC ATGGGCCAAT TACAGGTCCC GGCCGAGGCC
CTTTACGGCG CGCAGACTCA GCGTGCGGTG GAAAATTTTC CGATCAGCCA TCAGCGTATG
CCCAGGCTGT TCATTCGCGC GCTACTGCTG GCCAAAGCGG CCGCTGCACA GGCGAACCTT
GAGCTGGAGC AGATCAGCGA AGGGCAGAGC CAGGCGATTG TCGGTGCCGT GAAAGAGCTG
TTGGCCAGCG ACTACATGAC TCATTTCCCG GTCGATATCT TCCAGACCGG TTCCGGCACC
AGCACCAACA TGAACGCCAA CGAAGTGCTC GCAACGCTGG CAACGCGGTT ACTGGGCGAA
GAGGTCAACC CCAACGATCA CGTCAACTGC GGGCAAAGCA GCAACGACAT CATCCCGACC
ACGATTCACG TCAGCGCCGC GCTGGCACTC CATGAACAAC TGCTGCCAGC GCTTGCGCAT
CTGGTGCAGG TCACCGAGCA CAAGGCCGTG CAAGTCCACG CCTTCGTCAA GACCGGCCGC
ACACACCTGA TGGACGCCAT GCCCGTGCGC ATGAGCCAGG TGCTCAATGG CTGGGCGCAG
CAGATTCGCG CCAACATCGA ACATCTGCAG GGTTTGCAGC CCAGCCTGCA AGCACTGGCT
CAGGGCGGCA CGGCGGTTGG CACCGGAATC AATGCGCATC CCGAGTTTGC AGCACGCTTC
AGTCGCCAAT TGAGCACATT GACCGGCGTG CAGTTCGCAC CGGGCAAGGA CCTTTTTGCG
CTGATCGGCT CGCAAGACAC AGCGGTAGCA GTGTCTGGTC AGCTAAAGGC CACGGCGGTG
TCGCTGATGA AAATTGCCAA CGACCTGCGC TGGATGAACT CCGGGCCGCT GGCAGGGCTG
GGTGAGATCG AGCTTGAGGC CCTGCAACCG GGCTCGTCGA TCATGCCCGG CAAGGTCAAC
CCGGTGATCC CCGAGGCGAC TGCGATGGTG GCCGCGCAGG TCATCGGCAA CGACGCGACC
ATCACCGTGG CGGGGCAGTC CGGCAACTTT GAGCTGAACG TGATGCTGCC GATCATCGCC
CAGAACCTGC TCAGCAGCAT CGAGCTGTTG GCCAACGCCA GCCGGCTTCT GGCGGACAAG
GCAGTTGCCA GCTTCAAGGT CAATGAATCC AGGCTCCAGG AAGCGCTGTC ACGTAACCCG
ATTCTGGTCA CCGCGCTCAA CCCGATCATC GGTTATCAGA AGGCCGCCGA AATCGCCAAG
GCCGCTTACA AGCAGGGTCG CCCGGTGATT GACGTCGCTC TGGAGCACAC CGATTTGCAG
CGCAGCGAGC TGGAAGTGTT GCTCAATCCC GAAAAACTCA CCGCTGGCGG CATCTGA
|
|---|
| Protein sequence | MSNTRIERDS MGQLQVPAEA LYGAQTQRAV ENFPISHQRM PRLFIRALLL AKAAAAQANL
ELEQISEGQS QAIVGAVKEL LASDYMTHFP VDIFQTGSGT STNMNANEVL ATLATRLLGE
EVNPNDHVNC GQSSNDIIPT TIHVSAALAL HEQLLPALAH LVQVTEHKAV QVHAFVKTGR
THLMDAMPVR MSQVLNGWAQ QIRANIEHLQ GLQPSLQALA QGGTAVGTGI NAHPEFAARF
SRQLSTLTGV QFAPGKDLFA LIGSQDTAVA VSGQLKATAV SLMKIANDLR WMNSGPLAGL
GEIELEALQP GSSIMPGKVN PVIPEATAMV AAQVIGNDAT ITVAGQSGNF ELNVMLPIIA
QNLLSSIELL ANASRLLADK AVASFKVNES RLQEALSRNP ILVTALNPII GYQKAAEIAK
AAYKQGRPVI DVALEHTDLQ RSELEVLLNP EKLTAGGI
|
|---|
| |