Gene PSPTO_4453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4453 
SymbolrpoN 
ID1186134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5017229 
End bp5018722 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content58% 
IMG OID637395793 
ProductRNA polymerase sigma-54 factor 
Protein accessionNP_794207 
Protein GI28871588 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.508978 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACCAT CGCTAGTCTT GAGAATGGGC CAGCAGCTGA CGATGACACC GCAGCTGCAA 
CAGGCAATCC GCTTACTTCA GCTTTCCACT CTGGACCTCC AGCAGGAGAT TCAGGAGGCG
CTGGAGTCAA ACCCTATGCT GGAACGGCAG GAAGAAGGCG ACGACTTCGA CAACTCCGAC
CCGCTTGCCG ACAACATCGA ACAAAAGCCC AACCCCGACG TTCAGGAACC GACCTACCAG
GAATCCGCGC CTACCGTGGA CAACCTCGAG GACGGCGAAT GGAGCGAGCG CATTCCCAAT
GAACTGCCGG TCGATACTGC CTGGGAAGAT GTCTACCAGA CCAGCGCCAG CAGCCTGCCC
AGCAACGATG ATGACGAGTG GGACTTCACC ACCCGTACTT CGGCCGGCGA AAGCCTGCAA
AGCCACCTGC TGTGGCAACT GAACGTCGCA CCGATGTCCG ACAAGGATCG CCTGGTCGCC
GTCACGCTGA TCGACTGCAT CAACAATCAG GGCTATCTGG ACGAGACGCT TGAAGAGATT
CTCGAGTCTT TCGACCCGGA ACTGGACATA GAACTCGACG AAATCGAAGC CGTACTGCAC
CGCATCCAGC AGTTTGAACC TGCGGGCATC GGCGCGCGCA ATCTCAGTGA ATGCCTGCTG
CTGCAATTGC GCCAGTTGCC GGCGAAGACG CCTTGGCTGA CAGAAGCGCA GCGACTGGTC
ACCGACTATA TCGACCTGCT GGGCAGCCGT GACTATGGCC AGTTGATGCG CCGCATGAAG
CTCAAGGAAG ACGAGCTGCG TCAGGTCATC GAGCTGGTCC AGAGCCTCAA CCCGCGCCCG
GGTTCGCAAA TCGAATCCAC AGAAGCCGAA TATGTCATCC CTGATGTGAT CGTGCGCAAG
GACAACGAGC GCTGGCTGGT CGAGCTCAAT CAGGAGTCGG TACCGCGTCT GCGCGTCAAC
CCGCAATACG CAGGCTTCGT GCGTCGCGCC GATACCAGCG CCGACAACAC CTTCATGCGC
AACCAGTTGC AGGAAGCCCG CTGGTTCATC AAGAGCCTGC AGAGCCGCAA CGAAACGCTG
ATGAAGGTCG CCACGCAGAT CGTAGAGCAT CAGCGCGGTT TCCTCGAGTA CGGCGACGAG
GCCATGAAGC CGCTCGTCCT GCACGATATC GCCGAAGCGG TAGGCATGCA CGAGTCGACG
ATCTCGCGGG TGACCACGCA GAAATTCATG CACACCCCAC GCGGTATTTA CGAGCTGAAA
TACTTCTTCT CGAGCCACGT GAGCACCTCC GAGGGCGGCG AATGCTCGTC CACGGCAATT
CGCGCAATCA TCAAAAAACT GGTGGCTGCG GAAAATCAGA AAAAGCCGTT GAGTGATAGC
AAGATCGCTG GTTTACTGGA GGCACAAGGC ATTCAAGTAG CCCGTCGCAC AGTCGCCAAG
TACCGCGAGT CACTCGGGAT AGCGCCTTCC AGTGAGCGTA AGCGATTGAT GTGA
 
Protein sequence
MKPSLVLRMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EEGDDFDNSD 
PLADNIEQKP NPDVQEPTYQ ESAPTVDNLE DGEWSERIPN ELPVDTAWED VYQTSASSLP
SNDDDEWDFT TRTSAGESLQ SHLLWQLNVA PMSDKDRLVA VTLIDCINNQ GYLDETLEEI
LESFDPELDI ELDEIEAVLH RIQQFEPAGI GARNLSECLL LQLRQLPAKT PWLTEAQRLV
TDYIDLLGSR DYGQLMRRMK LKEDELRQVI ELVQSLNPRP GSQIESTEAE YVIPDVIVRK
DNERWLVELN QESVPRLRVN PQYAGFVRRA DTSADNTFMR NQLQEARWFI KSLQSRNETL
MKVATQIVEH QRGFLEYGDE AMKPLVLHDI AEAVGMHEST ISRVTTQKFM HTPRGIYELK
YFFSSHVSTS EGGECSSTAI RAIIKKLVAA ENQKKPLSDS KIAGLLEAQG IQVARRTVAK
YRESLGIAPS SERKRLM