Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4453 |
Symbol | rpoN |
ID | 1186134 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5017229 |
End bp | 5018722 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637395793 |
Product | RNA polymerase sigma-54 factor |
Protein accession | NP_794207 |
Protein GI | 28871588 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.508978 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACCAT CGCTAGTCTT GAGAATGGGC CAGCAGCTGA CGATGACACC GCAGCTGCAA CAGGCAATCC GCTTACTTCA GCTTTCCACT CTGGACCTCC AGCAGGAGAT TCAGGAGGCG CTGGAGTCAA ACCCTATGCT GGAACGGCAG GAAGAAGGCG ACGACTTCGA CAACTCCGAC CCGCTTGCCG ACAACATCGA ACAAAAGCCC AACCCCGACG TTCAGGAACC GACCTACCAG GAATCCGCGC CTACCGTGGA CAACCTCGAG GACGGCGAAT GGAGCGAGCG CATTCCCAAT GAACTGCCGG TCGATACTGC CTGGGAAGAT GTCTACCAGA CCAGCGCCAG CAGCCTGCCC AGCAACGATG ATGACGAGTG GGACTTCACC ACCCGTACTT CGGCCGGCGA AAGCCTGCAA AGCCACCTGC TGTGGCAACT GAACGTCGCA CCGATGTCCG ACAAGGATCG CCTGGTCGCC GTCACGCTGA TCGACTGCAT CAACAATCAG GGCTATCTGG ACGAGACGCT TGAAGAGATT CTCGAGTCTT TCGACCCGGA ACTGGACATA GAACTCGACG AAATCGAAGC CGTACTGCAC CGCATCCAGC AGTTTGAACC TGCGGGCATC GGCGCGCGCA ATCTCAGTGA ATGCCTGCTG CTGCAATTGC GCCAGTTGCC GGCGAAGACG CCTTGGCTGA CAGAAGCGCA GCGACTGGTC ACCGACTATA TCGACCTGCT GGGCAGCCGT GACTATGGCC AGTTGATGCG CCGCATGAAG CTCAAGGAAG ACGAGCTGCG TCAGGTCATC GAGCTGGTCC AGAGCCTCAA CCCGCGCCCG GGTTCGCAAA TCGAATCCAC AGAAGCCGAA TATGTCATCC CTGATGTGAT CGTGCGCAAG GACAACGAGC GCTGGCTGGT CGAGCTCAAT CAGGAGTCGG TACCGCGTCT GCGCGTCAAC CCGCAATACG CAGGCTTCGT GCGTCGCGCC GATACCAGCG CCGACAACAC CTTCATGCGC AACCAGTTGC AGGAAGCCCG CTGGTTCATC AAGAGCCTGC AGAGCCGCAA CGAAACGCTG ATGAAGGTCG CCACGCAGAT CGTAGAGCAT CAGCGCGGTT TCCTCGAGTA CGGCGACGAG GCCATGAAGC CGCTCGTCCT GCACGATATC GCCGAAGCGG TAGGCATGCA CGAGTCGACG ATCTCGCGGG TGACCACGCA GAAATTCATG CACACCCCAC GCGGTATTTA CGAGCTGAAA TACTTCTTCT CGAGCCACGT GAGCACCTCC GAGGGCGGCG AATGCTCGTC CACGGCAATT CGCGCAATCA TCAAAAAACT GGTGGCTGCG GAAAATCAGA AAAAGCCGTT GAGTGATAGC AAGATCGCTG GTTTACTGGA GGCACAAGGC ATTCAAGTAG CCCGTCGCAC AGTCGCCAAG TACCGCGAGT CACTCGGGAT AGCGCCTTCC AGTGAGCGTA AGCGATTGAT GTGA
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Protein sequence | MKPSLVLRMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EEGDDFDNSD PLADNIEQKP NPDVQEPTYQ ESAPTVDNLE DGEWSERIPN ELPVDTAWED VYQTSASSLP SNDDDEWDFT TRTSAGESLQ SHLLWQLNVA PMSDKDRLVA VTLIDCINNQ GYLDETLEEI LESFDPELDI ELDEIEAVLH RIQQFEPAGI GARNLSECLL LQLRQLPAKT PWLTEAQRLV TDYIDLLGSR DYGQLMRRMK LKEDELRQVI ELVQSLNPRP GSQIESTEAE YVIPDVIVRK DNERWLVELN QESVPRLRVN PQYAGFVRRA DTSADNTFMR NQLQEARWFI KSLQSRNETL MKVATQIVEH QRGFLEYGDE AMKPLVLHDI AEAVGMHEST ISRVTTQKFM HTPRGIYELK YFFSSHVSTS EGGECSSTAI RAIIKKLVAA ENQKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS SERKRLM
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