Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4435 |
Symbol | |
ID | 1186116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5002982 |
End bp | 5004142 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395775 |
Product | trypsin domain protein |
Protein accession | NP_794189 |
Protein GI | 28871570 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00143811 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAAGG CACTGCGTTT TTTCGGCTGG CCATTGCTGG CTGGCGTGCT TATCGCCCTG CTGATCATCC AGCGTTATCC GCAGTGGGTT GGCCTGCCGA GCATGGATGT CAATCTGCAA CAGGCGCCAC AGACGACCAA TGTCATGCAG GGCCCCTCTT CCTATGCCGA TGCGGTCATT GCCGCAGCGC CAGCGGTGGT CAACCTCTAT ACCACCAAGA TGGTGAACAA GGGCACCAAC CCGCTTTTTG AAGACCCGCA GTTCCGGCGC TTCTTTGGCG ACAACACGCC TAAACAGAAG CGCATGGAGT CCAGCCTTGG CTCTGGCGTG ATGATGAGCC CGGAAGGCTA CATCCTGACC AATAACCACG TCACCACTGG CGCGGACCAG ATCGTGGTGG CGCTCAAGGA CGGCCGCGAA ACCATCGCCA GAGTCATTGG CAACGACCCG GAAACCGACC TTGCGGTCTT GAAAATCGAT CTGAAAAACC TGCCAGCCAT TACCATCGCG CGCTCCGACG GCATTCGTAT CGGCGACGTC GCACTGGCCA TCGGCAACCC GTTCGGCGTC GGCCAGACCG TGACGATGGG CATCATCAGC GCCACCGGGC GTAACCAGTT GGGCCTGAAC ACGTATGAAG ACTTCATTCA GACCGACGCA GCCATCAACC CCGGCAACTC GGGCGGTGCG CTGGTGGATG CCGCTGGCAA TCTGATCGGC ATCAATACCG CGATCTTTTC CAAGTCCGGC GGATCTCAAG GCATCGGCTT CGCTATCCCG ACCAAGCTGG CGATGGATGT CATGAAGTCG ATCATCGAAC ACGGTCAGGT CATTCGCGGC TGGCTGGGCA TCGAGGTTCA ACCGTTGACC CCGGAGCTGG CCGAGTCCTT CGGGCTCAAG GATCGTCCAG GCATCGTTGT CGCTGGTATT TTTCGCGATG GGCCAGCGCA GAAAGCCGGG CTGCGACTGG GTGACGTAAT TCTTGCCATC AATGGCGAAC CTGCGGGTGA CGGCCGTCGC TCGATGAACC AGGTGGCGCG CACCAAGCCC AAGGACAAGA TTGCAATCGA CGTGATGCGC AACGGCAAGG AAATGCGCCT CAGCGCAGAA GTAGGCCTGC GCCCACCGCC TGCACCGACA CCTGCCGCAG CGCCCGAGTA A
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Protein sequence | MFKALRFFGW PLLAGVLIAL LIIQRYPQWV GLPSMDVNLQ QAPQTTNVMQ GPSSYADAVI AAAPAVVNLY TTKMVNKGTN PLFEDPQFRR FFGDNTPKQK RMESSLGSGV MMSPEGYILT NNHVTTGADQ IVVALKDGRE TIARVIGNDP ETDLAVLKID LKNLPAITIA RSDGIRIGDV ALAIGNPFGV GQTVTMGIIS ATGRNQLGLN TYEDFIQTDA AINPGNSGGA LVDAAGNLIG INTAIFSKSG GSQGIGFAIP TKLAMDVMKS IIEHGQVIRG WLGIEVQPLT PELAESFGLK DRPGIVVAGI FRDGPAQKAG LRLGDVILAI NGEPAGDGRR SMNQVARTKP KDKIAIDVMR NGKEMRLSAE VGLRPPPAPT PAAAPE
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