Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4414 |
Symbol | |
ID | 1186095 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4982681 |
End bp | 4984408 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395754 |
Product | penicillin-binding protein |
Protein accession | NP_794168 |
Protein GI | 28871549 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00243453 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCTTG AGGGCGCACT GTATCCTTGG CGTTTTCGCG TAGTCGTGGG TCTTCTGGTC TCCCTGGTGC TTGCCATTTG CTGGCGCATC GTCGATCTGC AGGTCATCGA CCACACCTTC CTCAAGGAGC AGGGTGACGC GCGCAGCCTT CGGCATATTC CGATTCCGGC TCACCGTGGC CTGATCACCG ACCGTAATGG CGAACCGCTT GCAGTTAGCA CGCCGGTTAC CACGCTGTGG GCCAACCCGC GCGAAATGCA GCAGGACAAG TCCAAGTGGC CGATGCTTGC AGCGGCTACA GGTCAGGATC TCAAAGCGCT GACCGATCGC CTGGAATCGC AGGCCACCAA GGAGTTCATT TACCTGGTTC GCGGCATGAC GCCGGAGCAG GGGCAGGCGG CGCTGGATTT GAAAGTCCCC GGCGTTTATG GCATCGAAGA ATTCCGCCGT TTCTACCCGG CAGGTGATGT GACCGCGCAC ATGGTTGGTT TTACTGACCT TGATGATCAC GGTCGCGAAG GTGTCGAGCT GGCGTATGAC GACTGGCTTG CCGGAGTGCC CGGCAAGCGG CAGGTCATCA AGGACCGGCG CGGCCGGCTG ATCAAGGACG TTCAGGTGAC CAAGAATGCC AAGGCCGGAA AGACCTTGGC TTTGTCTATT GACCTGCGCC TGCAATACCT GGCCACCCGT GAACTGCGTA ACGCCATCGT TGAAAACGAA GCGAAGGCAG GCAGCATGGT GATCATGGAC GTCAAGACCG GCGAGGTTCT GGCGATGGTC AACCAGCCGA CTTACAACCC GAACAACCGC CGCACCATGG TGCCAGCCGC CATGCGCAAC CGGGCGATCA TTGACGTGTT CGAACCAGGT TCGACCATGA AGCCGATCTC CATGACCGCA GCGCTGGACA GCGGCCGTTG GAAACCGACC GACAAGGTCG AGGTTTATCC GGGCACCCTG CAGATCGGCA AATACACGAT TCGCGACGTC ACCAAGACCG AAGGCCCGGT GCTCGACCTG ACCGGCATCC TGATCAACTC CAGTAACGTC GGGATGAGTA AAGTCGCGTT CGACGTAGGC GGCGAAGCTA TTTTCCGCGC CATGCAGCGC GTCGGCTTCG GTCAGTACAC TGGCCTGGGC TTCCCGGGCG AGCGCGTCGG CAACCTGCCT AACTACCGCG AATGGCGCAA GGCAGAAACC GCCACGCTGT CTTATGGCTA CGGTCTGTCG GTAACGGCCC TGCAACTGGT GCATGCCTAC GGCGCGCTGG CTAACAATGG CCGGATCGTA CCGCTGACCA TTTTGAAAAC AGACAAAGAG CCCGAGTCGA CTCAGGCTAT TCCCGAGAAA ACCGCCAAGA CCCTGCAAGG TATGTTGCAG CAGGTGATCG AAGACCCGCG CGGCGTGTAT CGCGCCCGTG TGCCGTCCTA TCACGTCGGC GGTAAGAGCG GTACAGCACG TAAGACGTCG ATCGGCACCA AGGGTTATGC GGAGAACTCC TACCGCTCCC TGTTCGCCGG TTTCGGCCCC ATGAGTAACC CGCGTTACGC CATCGTCGTG GTCATCGACG AGCCGAGCAA GGGCGGTTAC TACGGCGGTC TGGTTTCGGC TCCGGTGTTC AGCAAGGTCA TGTCCGGCAC GTTGCGTCTG ATGAACGTGA CGCCAGACAA CCTTGCGCCA CCGGAACAAG TCAATGTCGC ACCTGCAGCC AAAGGAGGGC GTGGTTGA
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Protein sequence | MKLEGALYPW RFRVVVGLLV SLVLAICWRI VDLQVIDHTF LKEQGDARSL RHIPIPAHRG LITDRNGEPL AVSTPVTTLW ANPREMQQDK SKWPMLAAAT GQDLKALTDR LESQATKEFI YLVRGMTPEQ GQAALDLKVP GVYGIEEFRR FYPAGDVTAH MVGFTDLDDH GREGVELAYD DWLAGVPGKR QVIKDRRGRL IKDVQVTKNA KAGKTLALSI DLRLQYLATR ELRNAIVENE AKAGSMVIMD VKTGEVLAMV NQPTYNPNNR RTMVPAAMRN RAIIDVFEPG STMKPISMTA ALDSGRWKPT DKVEVYPGTL QIGKYTIRDV TKTEGPVLDL TGILINSSNV GMSKVAFDVG GEAIFRAMQR VGFGQYTGLG FPGERVGNLP NYREWRKAET ATLSYGYGLS VTALQLVHAY GALANNGRIV PLTILKTDKE PESTQAIPEK TAKTLQGMLQ QVIEDPRGVY RARVPSYHVG GKSGTARKTS IGTKGYAENS YRSLFAGFGP MSNPRYAIVV VIDEPSKGGY YGGLVSAPVF SKVMSGTLRL MNVTPDNLAP PEQVNVAPAA KGGRG
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