| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4407 |
|---|
| Symbol | murC |
|---|
| ID | 1186088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4973697 |
|---|
| End bp | 4975157 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637395747 |
|---|
| Product | UDP-N-acetylmuramate--alanine ligase |
|---|
| Protein accession | NP_794161 |
|---|
| Protein GI | 28871542 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
|---|
| TIGRFAM ID | [TIGR01082] UDP-N-acetylmuramate--alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAGA ATCAGCGCGC CATGCCCCAG CCTGAAATGC GCCGTATCCG CCGCATCCAT
TTCGTCGGTA TCGGCGGCGT TGGCATGTGC GGTATTGCCG AGGTGCTGTT GAACCTCGGT
TACGAAGTGT CCGGCTCCGA CCTCAAGGGC TCGGCCGTGA CCGAACGCCT TGAGTCGTTC
GGTGCGCAGA TTTTCGTCGG CCATCGCGCC GAGAACACCG TGGGTGCCGA TGTACTGGTG
GTTTCCAGCG CCGTGAACAC GTCCAACCCG GAAGTCGCTA CCGCTCTGGA GCGTCGTATT
CCAGTGGTGC CGCGTGCCGA GATGCTCGCC GAGCTGATGC GCTATCGCCA CGGCATTGCC
GTTGCCGGTA CGCATGGCAA AACTACCACC ACCAGCCTGA TCGCCTCGGT GTTCGCGGCC
GGTGGCCTGG ACCCGACGTT CGTCATTGGT GGCCGTCTGA ACGCCGCCGG CACCAACGCG
CAACTGGGCA CCAGCCGTTA CCTGATTGCC GAAGCCGACG AAAGCGATGC CAGTTTTCTG
CACCTGCAAC CGCTGGTCGC GGTGGTCACC AACATCGATG CCGATCATAT GGCGACCTAC
GGCGGCGACT TCAACAAACT GAAGAAGACC TTTGTCGAGT TCCTGCACAA CCTGCCGTTC
TACGGTCTGG CAGTGATGTG CATTGATGAT CCGGTGGTGC GCGATATTCT GCCGTTGGTC
AAGCGCCCGA CCATGACTTA TGGGTTTAGC GAAGATTCTG ACGTACGCGC GATCAACGTG
CGTCAGGACG GCATGTTGAC GTTCTTCACC GTGCTGCGCC GCGACCGCGA GCCGCTGGAC
GTGTCGGTAA ACATGCCCGG CAACCACAAC GTACTGAACT CGCTGGCGAC CATCGCCATC
GCGACTGACG AAGGCGTCAG CGACGAAGCC ATCGTTCAAG GGCTTTCGGG CTTTCAGGGC
GTCGGCCGAC GCTTCCAGGT CTACGGCGAG CTGCCGGTCG AAGGCGGCCA CGTGATGCTG
GTCGACGATT ACGGTCACCA CCCGCGTGAA GTCGCTGCTG TGATCAGTGC TGTACGTGGC
GGCTGGCCGG ATCGTCGTCT GGTCATGGTT TATCAGCCGC ACCGTTTCAG TCGTACCCGC
GATCTGTACG ACGATTTCGT GCAGGTGCTT GCTGAAGCCA ATGTGTTGCT GTTGATGGAG
GTCTACCCGG CCGGTGAAGA GCCGGTCCCT GGCGCGGACA GCCGCAACCT GTGCCATAGC
ATTCGCCAGC GCGGCCAACT GGACCCGATC TATATCGAGC GCGGCGTCGA GCTGGCGCCG
CTGGTCAAGC CGCTGCTGCG CGCAGGAGAC ATTTTGCTGT GTCAGGGCGC TGGTGACATT
GCTGGTCTGG CACCGCGATT ACTGAATAGC CCGCTGTTCG TCGGCGCGAA AGTGGCTTCG
ACCGAAGGTA AGTTGAAATG A
|
|---|
| Protein sequence | MVENQRAMPQ PEMRRIRRIH FVGIGGVGMC GIAEVLLNLG YEVSGSDLKG SAVTERLESF
GAQIFVGHRA ENTVGADVLV VSSAVNTSNP EVATALERRI PVVPRAEMLA ELMRYRHGIA
VAGTHGKTTT TSLIASVFAA GGLDPTFVIG GRLNAAGTNA QLGTSRYLIA EADESDASFL
HLQPLVAVVT NIDADHMATY GGDFNKLKKT FVEFLHNLPF YGLAVMCIDD PVVRDILPLV
KRPTMTYGFS EDSDVRAINV RQDGMLTFFT VLRRDREPLD VSVNMPGNHN VLNSLATIAI
ATDEGVSDEA IVQGLSGFQG VGRRFQVYGE LPVEGGHVML VDDYGHHPRE VAAVISAVRG
GWPDRRLVMV YQPHRFSRTR DLYDDFVQVL AEANVLLLME VYPAGEEPVP GADSRNLCHS
IRQRGQLDPI YIERGVELAP LVKPLLRAGD ILLCQGAGDI AGLAPRLLNS PLFVGAKVAS
TEGKLK
|
|---|
| |