Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4406 |
Symbol | |
ID | 1186087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4972741 |
End bp | 4973700 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637395746 |
Product | D-alanine--D-alanine ligase |
Protein accession | NP_794160 |
Protein GI | 28871541 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.206514 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACAGCCG TTGCCCGGTC TTCCCTGCGC TCGACACTTG AGCCGAAAAG CTTCGGCCGT GTCGCCGTGC TCTTCGGTGG CAAGAGTGCC GAGCGGGAAG TCTCCCTGAA CTCGGGGAAT GCAGTGCTCA AGGCGCTGCT CGACGCTGGC GTGGATGCGT TCGGCATCGA TGTGGGCGAC GACTTCCTGC AGCGACTGGT CAGCGAAAAA ATCGACCGTG CGTTTATTGT CCTGCACGGC CGCGGCGGCG AAGACGGCAC CATGCAAGGG CTGCTGGAAT GTCTGGAAAT CCCTTACACC GGCAGCGGTG TACTGGCTTC GGCACTGGCA ATGGACAAGT TGCGCACCAA GCAGGTCTGG CAGAGCCTTG GCCCTGCAAC GCCGCTGCAC GCCGTTCTGG AAAACGAGAA CGATTGTATT TGCGCGGCCA CGGAACTGGG CTTCCCTTTG ATCGTCAAAC CGGCCCATGA AGGTTCAAGT ATCGGTATGG CGAAGGTGAA CAGCGTCGAT GAATTGATCG CCGCCTGGAA AGCTGCCAGT ACCTACGATT CGCAAGTATT AGTCGAACAG TGGATTCAGG GTCCTGAGTT TACTGTGGCG TCTCTGCGTG GCCAGGTGTT GCCTCCCATT GGCCTGGGCA CTCCTCACAG TTTTTATGAT TACGACGCCA AGTACCTGGC CTCCGATACT CAGTACCGGA TCCCGTGTGG GCTTGACGAT GCACAGGAAC AGCAACTCAA ACAACTTGCA GCACGCGCGT GCGACGCCAT CGGCATTGCA GGGTGGGCGC GCACGGATGT GATGCAGGAC GCAGAGGGCA AGTTCTGGCT GTTGGAAGTC AATACCGTGC CCGGCATGAC CGATCACAGT CTGGTGCCGA TGGCAGCACG CGCTGCCGGT CTGAACTTTC AACAACTGGT GTTGGCGATA CTAGCCGACA GCGTTCAGGC GAGAGGTTAA
|
Protein sequence | MTAVARSSLR STLEPKSFGR VAVLFGGKSA EREVSLNSGN AVLKALLDAG VDAFGIDVGD DFLQRLVSEK IDRAFIVLHG RGGEDGTMQG LLECLEIPYT GSGVLASALA MDKLRTKQVW QSLGPATPLH AVLENENDCI CAATELGFPL IVKPAHEGSS IGMAKVNSVD ELIAAWKAAS TYDSQVLVEQ WIQGPEFTVA SLRGQVLPPI GLGTPHSFYD YDAKYLASDT QYRIPCGLDD AQEQQLKQLA ARACDAIGIA GWARTDVMQD AEGKFWLLEV NTVPGMTDHS LVPMAARAAG LNFQQLVLAI LADSVQARG
|
| |