Gene PSPTO_4402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4402 
SymbollpxC 
ID1186083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp4968298 
End bp4969209 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content56% 
IMG OID637395742 
ProductUDP-3-0-acyl N-acetylglucosamine deacetylase 
Protein accessionNP_794156 
Protein GI28871537 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase 
TIGRFAM ID[TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0290768 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAAAC AACGCACCCT GAAAAATATT ATCCGTGCCA CAGGTGTAGG CCTGCACTCC 
GGGGAGAAGG TTTACCTGAC CCTCAAGCCC GCACCTGTGA ATACCGGCAT TGTGTTTTGC 
CGAGCTGACC TTGACCCCGT CGTGCAGATC CCTGCGCGTG CGGAAAACGT CGGCGACACC 
ACTCTGTCGA CCACTCTGGT CAATGGTGAT GTCAAAGTTG ATACGGTAGA ACACCTGCTC 
TCGGCCATGG CTGGCCTTGG CATCGATAAC GCCTACGTCG AGCTCTCTGC CTCCGAAGTT 
CCTATCATGG ACGGCAGCGC AGGCCCTTTC GTATTCCTGA TTCAATCGGC AGGCCTGGAA 
GAACAGGACG CGCCGAAGAA ATTCATCCGT ATCCTGCGTG AAGTCACAGT GGAAGAGGGC 
GGTAAACGCG CTACTTTCGT GCCTTTCGAA GGGTTCAAGG TCAGTTTCGA GATCGATTTC 
GATCACCCCG TCTTCCGTGA CCGCACCCAG AGTGCAAGCG TGGACTTTTC CAGCACTTCC 
TTTGTGAAGG AAGTCAGCCG TGCCCGGACC TTCGGGTTCA TGAGTGATAT CGAGTACCTG 
CGCAAGCACA ACCTCGCACT CGGCGGCAGT GTGGAAAACG CCATCGTGGT CGACAAGGAC 
GGTGTACTGA ACGAAGACGG CCTGCGTTAC GAGGACGAAT TCGTCAAACA CAAAATCCTC 
GATGCTATCG GTGACCTCTA CCTGCTGGGC AATAGCCTGA TCGGTGAGTT CCGGGGCTTC 
AAATCGGGGC ATGCACTGAA CAATCGTCTC CTGCGCGCCT TGATCGAGCA GACAGACGCC 
TGGGAAGTCG TGACCTTCGA GGATGCCAGT ACGGCACCTA TTTCTTACAT GCGTCCTGTC 
GCGGCCGTGT AA
 
Protein sequence
MIKQRTLKNI IRATGVGLHS GEKVYLTLKP APVNTGIVFC RADLDPVVQI PARAENVGDT 
TLSTTLVNGD VKVDTVEHLL SAMAGLGIDN AYVELSASEV PIMDGSAGPF VFLIQSAGLE 
EQDAPKKFIR ILREVTVEEG GKRATFVPFE GFKVSFEIDF DHPVFRDRTQ SASVDFSSTS 
FVKEVSRART FGFMSDIEYL RKHNLALGGS VENAIVVDKD GVLNEDGLRY EDEFVKHKIL 
DAIGDLYLLG NSLIGEFRGF KSGHALNNRL LRALIEQTDA WEVVTFEDAS TAPISYMRPV 
AAV