| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4365 |
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| Symbol | |
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| ID | 1186046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4925971 |
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| End bp | 4928022 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395706 |
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| Product | GGDEF domain/EAL domain protein |
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| Protein accession | NP_794120 |
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| Protein GI | 28871501 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGCTGG AACTCAAGAA CAGCCTGTCG GTAAAGTTGC TGCGCGTCGT ACTGCTATCA
GCGCTTCTGG TAGGCGTTGT GCTGAGCTGT GCGCAAATCG TCTTCGACGC GTACAAGACC
CGTCATGCCG TGGAAACCGA TGCCGAACGC ATTCTCGGCA TGTTCCGCGA CCCCTCGACC
CAGGCCGTCT ACAGCCTGGA CCGCGAGATG GGCATGCAGG TCATCGAAGG TCTGTTTCAG
GACGATGCCG TGCGCATGGC CTCGATCGGG CACCCCAATG AAACCCTGCT TGCCGAAAAA
GACCGCCCGC TGAAGGCCTC TTCCAGCCGC TGGCTGACCG ATCTCATCCT TGGCCAGGAG
CGCAGCTTCA CCACTCAACT GGTGGGCCGC AGCCCTTACA GCGAGTATTA CGGCGACCTG
CGCATCACGC TGGACACCGC CAACTACGGC GAAGGTTTTC TGGTCAACGC CGGCATCATT
TTCATTGCCG GCGTGCTGCG CGCACTGGCG ATGGGGCTGG TGCTGTACCT GGTCTATCAC
TGGCTGTTGA CCAAGCCGCT GTCAAAAATC ATCGAACACC TTATTGCGAT CAATCCGGAC
CGCCCCAGCG AACACCAGTT GCCGCTGCTC AAGGGCCATG AGAAAAACGA ACTGGGCATC
TGGGTCAACA CCGCCAATCA GCTGCTGGCC TCTATCGAAC GCCACACATA CCTGCGCCAC
GAAGCCGAAA ATAATCTACA GCGCATGGCG CAGTACGACT TTCTGACCGG CCTGCCCAAC
CGGCTGCAAT TGCAGACCGG GCTGGACAGG ATTCTGGAGA ACGCCGGACG TCAGCAACAC
AGGGTCGCGA TTCTTTGCGT GGGCCTGGAC GACTTCAAGG GCATCAACGA GCAGTTCAGC
TACCAGGCTG GCGACCAACT GCTGCTTGCA CTGGCAGACC GGCTGCGCGC TCACAGCGGG
CGCCTCGGTG CCCTGGCGCG ATTGGGTGGT GATCAGTTTG CATTGGTGCA GGCCAGCATC
GAGCAGCCGT ATGAGGCGGC CGAACTGGCG CAGAAAATCC TCGACGAGCT TGAAGCCCCG
TTTTCTGTGG GCGATCAGCA GATCCGTCTG CGCGCGACCA TCGGTATCAC CCTGTTCCCC
GAAGACGGCG ATAGCACTGA AAAGCTGCTG CAGAAAGCCG AACAGACCAT GACGCTGGCC
AAAGCCCGCT CGCGCAACCG GTATCAGTTC TACATCGCCA GCGTCGACAG CGAAATGCGC
CGCCGCCGTG AGCTTGAAAA AGACCTGCGC GAAGCCCTGC CGCGCAATCA GTTGTACCTG
GTCTATCAGC CGCAAATCAG TTACCGCGAT CATCACGTGG TGGGCGTTGA GGCATTGATA
CGCTGGCAGC ATCCAGAGCA TGGCCTGGTG CCGCCAGACG TGTTCATCCC GCTGGCCGAG
CAAAACGGCA GCATCATTGC CATCGGCGAA TGGGTGCTTG ATCAGGCCTG TCGCCAGTTG
CGGGAATGGC TCGATCAGGG CTTCACCGAC TTGCGCATGG CGGTCAACCT GTCGACAGTG
CAACTGCACC ATGCAGAGCT GCCGCGCGTG GTGAACAACC TGCTACAGAT CTATCGCCTG
CCGCCCCGCA GCCTGGAACT GGAAGTGACC GAAACCGGCC TTATGGAAGA CATTAATACC
GCCGCCCAAC ACCTGCTGAG CCTGCGGCGC TCCGGCGCAT TGATCGCCAT CGATGATTTC
GGCACCGGCT ATTCCTCGCT GAGCTACCTG AAAAGCCTGC CGCTGGACAA GATCAAGATC
GACAAGAGCT TCGTTCAGGA CCTGATTGAC GACGACGATG ACGCCACCAT TGTGCGGGCA
ATCATCCAGT TGGGTAAAAG CCTGGGCATG CAAGTCATTG CCGAGGGCGT GGAAACGGTC
GAGCAGGAAG CCTACGTTGT GGCCGAGGGC TGCCATGAAG GCCAGGGCTA TCTGTACAGC
AAGCCGCTGC CGGGCCGGGA ACTGCTGACG TATCTGAAGC AAGTCCGACA AAGCAACACG
GCGAGTCTCT GA
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| Protein sequence | MKLELKNSLS VKLLRVVLLS ALLVGVVLSC AQIVFDAYKT RHAVETDAER ILGMFRDPST
QAVYSLDREM GMQVIEGLFQ DDAVRMASIG HPNETLLAEK DRPLKASSSR WLTDLILGQE
RSFTTQLVGR SPYSEYYGDL RITLDTANYG EGFLVNAGII FIAGVLRALA MGLVLYLVYH
WLLTKPLSKI IEHLIAINPD RPSEHQLPLL KGHEKNELGI WVNTANQLLA SIERHTYLRH
EAENNLQRMA QYDFLTGLPN RLQLQTGLDR ILENAGRQQH RVAILCVGLD DFKGINEQFS
YQAGDQLLLA LADRLRAHSG RLGALARLGG DQFALVQASI EQPYEAAELA QKILDELEAP
FSVGDQQIRL RATIGITLFP EDGDSTEKLL QKAEQTMTLA KARSRNRYQF YIASVDSEMR
RRRELEKDLR EALPRNQLYL VYQPQISYRD HHVVGVEALI RWQHPEHGLV PPDVFIPLAE
QNGSIIAIGE WVLDQACRQL REWLDQGFTD LRMAVNLSTV QLHHAELPRV VNNLLQIYRL
PPRSLELEVT ETGLMEDINT AAQHLLSLRR SGALIAIDDF GTGYSSLSYL KSLPLDKIKI
DKSFVQDLID DDDDATIVRA IIQLGKSLGM QVIAEGVETV EQEAYVVAEG CHEGQGYLYS
KPLPGRELLT YLKQVRQSNT ASL
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