Gene PSPTO_4362 details

Gene Information

• Locus tag: PSPTO_4362
• ID: 1186043
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 4924208
• End bp: 4924810
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637395703
• Product: transporter, LysE family
• Protein accession: NP_794117
• Protein GI: 28871498
• COG category: [R] General function prediction only
• COG ID: [COG1279] Lysine efflux permease
• TIGRFAM ID: [TIGR00948] L-lysine exporter

Plasmid Coverage information

• Num covering plasmid clones: 36
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGGCAAA GCTACTTCAA CGGCCTGCTG ATCGCGGCAG GCCTGATCAT GGCTATCGGT 
ACTCAAAATG CTTTCGTGCT GGCTCAGGGG CTGCGCCGTG AACATCACGT GCCCGTCGCG 
ATGCTGTGCG TTGTCTGCGA CGCCATTCTG GTGGCGGCTG GTGTTTTCGG CCTGGCCAAT 
GTGCTGGCAC ACAACCCCAC CTTGCTGGCG GTGGCGCGCT GGGGCGGCGT GATTTTCCTG 
ACCTGGTACG GCCTGCAGGC ATTGCGGCGC GCCTGCTCGC GGCAAAGTCT GGAGCACAGC 
GCAGCGGCGG GCACACGGTC ACGTCGTACC GTGCTGCTCA GTGCGCTGGC CGTTACCCTG 
CTCAACCCGC ATGTCTATCT GGACACCGTG CTGCTGATCG GCTCGCTCGG GGCGCAACAG 
AGCGTGCCGG GTGCCTATGT CGCAGGTGCC GCCAGCGCTT CGCTGTTATG GTTCTCGGCC 
CTCGCCATCG GCGCGGCATG GCTCGCCCCC TGGCTGGCAC GCCCTGCTAC ATGGCGCATG 
CTTGACGTAA TGATCGCTGT AATGATGTTC AGCGTAGCGT TCCAGTTGAT CCGTTCAGCC 
TGA 

 

Protein sequence

MWQSYFNGLL IAAGLIMAIG TQNAFVLAQG LRREHHVPVA MLCVVCDAIL VAAGVFGLAN 
VLAHNPTLLA VARWGGVIFL TWYGLQALRR ACSRQSLEHS AAAGTRSRRT VLLSALAVTL 
LNPHVYLDTV LLIGSLGAQQ SVPGAYVAGA ASASLLWFSA LAIGAAWLAP WLARPATWRM 
LDVMIAVMMF SVAFQLIRSA