| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4340 |
|---|
| Symbol | |
|---|
| ID | 1186021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4891381 |
|---|
| End bp | 4894203 |
|---|
| Gene Length | 2823 bp |
|---|
| Protein Length | 940 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637395682 |
|---|
| Product | insecticidal toxin protein, putative |
|---|
| Protein accession | NP_794096 |
|---|
| Protein GI | 28871477 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCGA TCACGCACAC CAACACGCCG CAATTGGCGG TCAGCGATTC ACGGGGTCTG
CCGGTACGCA GTGTGCAGTT CTATCGTGGC GCTGATGGTC AGCCTGTTGA CGCGAGGGTG
ACGCAGCACT ATTTCGACAA GGCCGGGCGA CTGATCGCCA GTCGCGATCC ACGTTTTTCC
AGTCGTTTGA AATACGGTGT CTGTGCGCCT GTGAACCTGA TGCAAATCGT CAGCTTGTCC
GGGGCTTTGC TGTTATCGAA AAGTGTCGAT TCAGGTTGGC GGGTGAGCCT GAACGGCGAA
GCGGGGCAGT TAGTCGACAG CTGTGACGGA CGTGACAACC CGCGCCAGAT CGAATACGAC
GGGCTGTTGC GCCCTTTGGC GATCAACGAA TCAGGCCGAA TGACCGAGCG CTTCACTTAT
GGCGGGCCTG CCACTGCTGA GCATAACCAG TGCAATCAAC TGATTCGCCA TGACGATACG
GCAGGCTCGC GCTTGCTGCG GGACTATGGA CTGTCGGGTA GGGCGTTGAG CGAAAAAAGG
TACTTCCTGC AGTCGCCCGA CAGCCCGGAC TGGCCACTTG CCGAGCCTGA TCGTGATGCA
CTGCTCGAGC CGGTCGGCCT GCAGACGCGC TGGGCTTTCA ACGCGCAGGG CGAGGACCTG
GCGCAGACTG ACGCAAACGG TAATGTCCAG CGTTTCAGTC ACGGTGTGGC TGGGCAACTG
CACGCTGTTG AACTGACCCT GGCCAATACG GCACAGCGGC AAACGCTGGT CAGTGCAATT
CACTACGACG CGTTCAATCA GGCCGAGCAG GAGACGGCAG GAAATGGTGT GGTCAGTCGC
TATGTGTATG ATCAACAGGA CGGTCGGCTG ACTGAGCTCA GTGCGCTATC TGCCGACGGC
TCAGTGTTGC AAAAACTGAA CTACAGCTAT GACCCGGCAG GTAACGTTCT ACTCATCAAC
GATGCCTCGC AACCAGACCG GTATTGCGGC AATCAGCGTA TCGAGCCGAT AAACCGTTAC
TGTTACGACA CGTTGTATCA GTTGATCGAA GCCACGGGGC GGGAGGTCAG AAACGGGGCC
AGCCATGGTC CGGCGCTACC CGGTCTGCAA CCTCTGCCGA CGCTCGATCC TTGCCAGGTC
AGCAACTACA CACAGCGTTA CAGCTACGAC GCTGCGGGTA ACCTGCTGCA AATGCGCCAC
GAAGGCGCGC ACAACTTCAC CCGCAACATG CACGTTGATC CCGACAGCAA TCGCAGCCTG
CCCGACAATG ACAGGTATGT GGATTTCGCC ACGAGTTTTG ATGCCAACGG CAATCTGCTG
CAACTCGTGC GTGGGCAGAC CATGAGCTGG GATGTGCGTA ATCAGTTGCG GCAAATCACT
ACCGTGCAAC GTGAAGACGC ACCGAATGAT GAAGAGCGCT ATGTATACGA CGGCCAGGGC
CAGCGCTGCC GCAAGATCAG CACCGCGCAG GCATCAGGTC GCACACTGAC CAATGAAGTT
CGCTACCTGC CGGGACTGGA AGTTCGGACC ACGGCCGATG GAGAAACTCT TCACGTCGTT
ACGGCTCAGG CGGGTCGCAA CAGCGTGCGG GTGTTGCACT GGGAAGCCGG AAAACCAGGC
GCTATTGCGA ACGATCAGGT GCGTTACAGC CTGGGTGATC ATCTGGGCTC GAGCACGCTG
GAGCTTGATC AGCAAGGCGG CCTGATCAGC CAGGAAAGTT ATTACCCCTT TGGCGGCACG
GCCTGGTGGG CGGCGCGTAG TGCAGTGGAG GCCAAGTACA AAACAGTGCG TTATTCGGGT
AAAGAGCGCG ATGCCAGCGG GCTTTATTAT TACGGGTTCA GGTATTACGC GCCGTGGTTG
CAGCGGTGGA TCAATCCTGA CCCGGCGGGG GATGTGGATG GGTTGAATCT GTACAGGATG
GTCAGAAATA ATCCGCTTGT TTACGTTGAT GCGAAGGGCC AGCAACCTGA ACCTGTTCCA
AAAACTATTC ACCAGATCTG GATAGGTGAA AACAAGAATG CCTTGAGAGC TCAGGTTAGC
AATATCAACA GAACCGTTGA AATGGCTTGG GGGTATAAAG TGAAGTTGCA TCTGGAAACG
AGGACGCCGG AAGCTTATTC GGAAATCGAA AAGGATCTGA GATCCGAAGT GGTTCTGCTT
CCTGATTCCC AGGTTTTTCA AAACTTCAAG GAGAAGCCGC TTTATGCGGC CTATGAAGAT
TTCCGAAGAA ACAATCAGAA TTACGCTTTC GCGGTAGACG TTTTACGTAT GCATACCGTT
CATGAGTTGG GCGGGATTTA TTCAGATGTC GATGACGTTT ATGCAGGTGC GGAGACTGGC
GGAATGACGC AGTTGGGGGA TAATCCGCTG TTTGCAGAAC CTGATGAGGT TTTGACGCTG
GATCCTGTTC ATGTCCCTTG GGAGCCCCAG AATTCTGTTG AAAGTTTTAT GGTCAATAAC
AGCTCATTTG CCGCTCATTC AGGTGCAGGC GTCTTACTTG ACATGATGGG GGAAGGAGCG
AAACGATATG ATGAAGCCGT TGAGGGCGGA AGTTATCCGG ATCCGACGGG CATGAACGGT
ATAGGTCTAA GTCTGCTCTG GAATCCTAAC CCGGCAGTAA GAGTTCGAAC GTTATCGAAT
GTAGTAGGCC CCGGCTTGTT TACAGACACA CTGCACGCTT CGGACACAGC ATACGGTGAG
CTTTTTAGTA ATCTGAAAGG CGTCGTCTTT CAAAAACAGC CGTTCACGTT TGCCGACCAA
ATGGCCAGGA AGATGCCGCT GCATCGGCAT ATAAAAAGCG GCGCGGCGCA AACCTGGCGC
TGA
|
|---|
| Protein sequence | MSSITHTNTP QLAVSDSRGL PVRSVQFYRG ADGQPVDARV TQHYFDKAGR LIASRDPRFS
SRLKYGVCAP VNLMQIVSLS GALLLSKSVD SGWRVSLNGE AGQLVDSCDG RDNPRQIEYD
GLLRPLAINE SGRMTERFTY GGPATAEHNQ CNQLIRHDDT AGSRLLRDYG LSGRALSEKR
YFLQSPDSPD WPLAEPDRDA LLEPVGLQTR WAFNAQGEDL AQTDANGNVQ RFSHGVAGQL
HAVELTLANT AQRQTLVSAI HYDAFNQAEQ ETAGNGVVSR YVYDQQDGRL TELSALSADG
SVLQKLNYSY DPAGNVLLIN DASQPDRYCG NQRIEPINRY CYDTLYQLIE ATGREVRNGA
SHGPALPGLQ PLPTLDPCQV SNYTQRYSYD AAGNLLQMRH EGAHNFTRNM HVDPDSNRSL
PDNDRYVDFA TSFDANGNLL QLVRGQTMSW DVRNQLRQIT TVQREDAPND EERYVYDGQG
QRCRKISTAQ ASGRTLTNEV RYLPGLEVRT TADGETLHVV TAQAGRNSVR VLHWEAGKPG
AIANDQVRYS LGDHLGSSTL ELDQQGGLIS QESYYPFGGT AWWAARSAVE AKYKTVRYSG
KERDASGLYY YGFRYYAPWL QRWINPDPAG DVDGLNLYRM VRNNPLVYVD AKGQQPEPVP
KTIHQIWIGE NKNALRAQVS NINRTVEMAW GYKVKLHLET RTPEAYSEIE KDLRSEVVLL
PDSQVFQNFK EKPLYAAYED FRRNNQNYAF AVDVLRMHTV HELGGIYSDV DDVYAGAETG
GMTQLGDNPL FAEPDEVLTL DPVHVPWEPQ NSVESFMVNN SSFAAHSGAG VLLDMMGEGA
KRYDEAVEGG SYPDPTGMNG IGLSLLWNPN PAVRVRTLSN VVGPGLFTDT LHASDTAYGE
LFSNLKGVVF QKQPFTFADQ MARKMPLHRH IKSGAAQTWR
|
|---|
| |