| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4310 |
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| Symbol | pcaR |
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| ID | 1185991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4860784 |
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| End bp | 4861626 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395652 |
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| Product | Pca regulon regulatory protein PcaR |
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| Protein accession | NP_794066 |
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| Protein GI | 28871447 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACGATG AACTGCGTAA TTCTTTTGCC TCATTGGCAC CGCCCATCGT GGCGTCGCCC
GCCAAGCGCA TTCAGGCGCT GACCGGCGAC CCTGATTTCA TGACATCGCT GGCGCGCGGG
CTGGCGGTGA TTCATGCTTT TCAGGAGCGC AAGCGGCACC TGACCATCGC GCAAATCAGC
CACCGCACGG AAATCCCCAG GGCGGCAGTG CGTCGTTGTC TGCATACGCT GATCAAGCTT
GGTTACGCGA CCACTGACGG CCGCACTTAT TCGTTGTTGC CCAAGGTTCT GACCCTGGGC
CATGCGTATC TGTCGTCAAC GCCGCTGGCG ACTTCTTCGC AGCCTTATCT GGACCGCATG
AGTGATCACC TGCACGAGGC CTGCAACATG GCCACGCTGG AAGGTAACGA CATTCTTTAT
ATTGCTCGTT CGGCAACGAC TCAGCGATTG ATCTCGGTCG ACCTGTCCGT CGGTGGGCGC
TTGCCAGCCT ACTGCACGTC GATGGGGCGA ATCCTGTTGG CCGCGCTGGA TGATGTGTCG
TTGCAGGAAT ACCTGGATCA CGTCGATCTG CAGCCCAAGA CCAGCCGGAC CATTCGCACC
CCCGAAGCGC TGCTTGAATG CTTGCAACTG GTTCGTCAAC AGGGCTGGTG TATTGTCGAT
CAGGAACTGG AGCAGGGGCT GCGCTCTATT GCCGTGCCGG TCTATGATGC GTCGGGTCAG
GTGCTGGCGG CGCTAAATGT CAGTACCAGC GCCGGGCGGG TGGCACGCAG CGAGCTGGAA
CAGCGCTTTT TGCCGATCAT GCTCGATGCC AGTCGCGACC TGAGTACTCA GCTGTTTACT
TGA
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| Protein sequence | MNDELRNSFA SLAPPIVASP AKRIQALTGD PDFMTSLARG LAVIHAFQER KRHLTIAQIS
HRTEIPRAAV RRCLHTLIKL GYATTDGRTY SLLPKVLTLG HAYLSSTPLA TSSQPYLDRM
SDHLHEACNM ATLEGNDILY IARSATTQRL ISVDLSVGGR LPAYCTSMGR ILLAALDDVS
LQEYLDHVDL QPKTSRTIRT PEALLECLQL VRQQGWCIVD QELEQGLRSI AVPVYDASGQ
VLAALNVSTS AGRVARSELE QRFLPIMLDA SRDLSTQLFT
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