| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4306 |
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| Symbol | pcaT |
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| ID | 1185987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4856343 |
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| End bp | 4857644 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395648 |
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| Product | dicarboxylic acid transport protein |
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| Protein accession | NP_794062 |
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| Protein GI | 28871443 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACAC CATCAAAAGC ACCGCATTAC ACCGGCGAGG AGCGAAGCAA AAGAATCTTC
GCGATCGTCG GCGCATCATC GGGGAATCTC GTCGAGTGGT TCGACTTCTA TATCTACGCG
TTTTGCGCGA TCTACTTTGC ACCAGCCTTC TTTCCTTCCG ATGATCCGAC CGTCCAGTTG
CTCAACACCG CAGGCGTGTT TGCTGCTGGC TTTCTGATGC GCCCGATTGG CGGCTGGCTG
TTTGGCCGCG TGGCCGACAA ACATGGCCGC AAGAACTCCA TGCTGATATC GGTCACCATG
ATGTGCGCAG GCTCGCTGAT CATCGCTTGC CTGCCGACTT ACGCATCGAT TGGTGCCTGG
GCACCGGCCT TGCTGCTCAT GGCGCGCCTG CTTCAGGGGC TGTCGGTAGG TGGCGAGTAC
GGCACCACGG CGACCTACAT GAGTGAAGTG GCGTTGCGCG GGCAGCGCGG CTTTTATGCT
TCGTTCCAGT ACGTGACCCT GATCGGCGGC CAGTTGCTGG CCGTATTGAC GGTGGTCATC
CTGCAGCAGT TTCTCACCAC GGAAGAGCTG CGTGACTACG GCTGGCGTAT CCCGTTCGTG
ATCGGCGCGG CTGCAGCAGT CATTGCTTTG CTGTTGCGCC GCACGCTCAA CGAAACCACC
ACCGCCGAAA GCCGTCAGGA CAAGGACGCT GGCAGCATTA CCGCGCTGTT CAAGAATCAC
GCAGCGGCTT TCATCACGGT GCTGGGTTAC ACCGCCGGTG GCTCGCTGAT TTTCTACACG
TTCACGACGT ACATGCAGAA GTACCTGGTC AACACCGGCG GCATGGAGGC CAAGACCGCC
AGCTACATCA TGACCGGCGC GCTGTTCCTG TACATGTGCA TGCAGCCGTT CTTCGGCATG
CTCGCGGACC GCATCGGTCG TCGTAATTCG ATGCTGTTGT TCGGCGCGCT GGGCACGCTG
TGCACCGTGC CGATCCTGAT GACTCTGAAA ACCACGACCA ACCCGTTCAT TGCGTTCGCA
CTGATTACCC TGGCGTTGGC GATTGTCAGC TTCTACACCT CGATCAGCGG GCTGGTCAAA
GCCGAGATGT TCCCACCGCA GGTACGCGCA CTGGGTGTTG GTCTGGCGTA TGCGGTGGCC
AACGCAATGT TCGGCGGTTC AGCCGAGTTC GTTGCCTTGA AACTCAAAAG CGCCGGCATG
GAAAACAGCT TCTACTGGTA CGTGACCGCG ATGATGGCGG TGGCGTTTCT GTTCAGTCTG
CGGTTGCCGA AAGAGCCCAA GTACCTGCAT CAGGATCATT GA
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| Protein sequence | MTTPSKAPHY TGEERSKRIF AIVGASSGNL VEWFDFYIYA FCAIYFAPAF FPSDDPTVQL
LNTAGVFAAG FLMRPIGGWL FGRVADKHGR KNSMLISVTM MCAGSLIIAC LPTYASIGAW
APALLLMARL LQGLSVGGEY GTTATYMSEV ALRGQRGFYA SFQYVTLIGG QLLAVLTVVI
LQQFLTTEEL RDYGWRIPFV IGAAAAVIAL LLRRTLNETT TAESRQDKDA GSITALFKNH
AAAFITVLGY TAGGSLIFYT FTTYMQKYLV NTGGMEAKTA SYIMTGALFL YMCMQPFFGM
LADRIGRRNS MLLFGALGTL CTVPILMTLK TTTNPFIAFA LITLALAIVS FYTSISGLVK
AEMFPPQVRA LGVGLAYAVA NAMFGGSAEF VALKLKSAGM ENSFYWYVTA MMAVAFLFSL
RLPKEPKYLH QDH
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