| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4305 |
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| Symbol | |
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| ID | 1185986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4854807 |
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| End bp | 4856267 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395647 |
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| Product | outer membrane efflux protein |
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| Protein accession | NP_794061 |
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| Protein GI | 28871442 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAGT CATTGATCTC TCTTGCAGTT ACCGCGTTCA TACTCGGCGG CTGCTCTTTG
ATCCCCGAGT ACAAGCAGCC GGAGGCCCCG GTCGCCGCAC AATACCCGCA AGGCCCGGCG
TACTCGCCGG TCGAAGGGGC CAAAATGGCC GCTGCGGAGC AAGGCTGGCG TCATTTCTTC
AATGACCCGG CGCTGCAACA GTTGATCGAA ACCGCGCTGC TCAACAACCG TGACCTGCGG
GTCGCGGCGC TGAACATCGA CGCCTACCGT GCGCAGTACC GCATCCAGCG TTCGGACCTG
TTCCCGGCGG TCTCGGCCAC TGGCAGCGGC TCACGTCAGC GCGTGCCTGC CGACCAGTCG
CAGACCAGCC AATCGGCGAT CAGCAGCAGC TACTCGGCAA CGCTGGGCGT CAGCGCTTAC
GAGCTGGACC TGTTTGGTCG GGTGCGCAGC CTCAGCGAAC AGGCGCTGGA AACCTACTTC
TCCAGCGAAG AAGCGCGTCG CAGCACGCAG ATCAGTCTGG TTGCCAACGT CGCCAATGCC
TACATGACCT GGCAGGCCGA CAAGGAACTG CTCAAGCTGA CGCAGGACAC CCTCAAGACC
TACGAAGAAA GCTTCCGCCT GACCTCGCGC AGCAACGAAG TCGGTGTTTC TTCGGCACTC
GACCTCAGCC AGTCGCGCAC CGCCGTCGAA AGCGCCCGCG CCCGACTGGC CCAGTACCAG
CGCCTGGTCG CTCAGGATCA AAACAGCCTG GTGCTGCTGC TGGGCACAGG CTTGCCTGAC
AACCTGCCGG CCAGCCATCT GCTCGACTCC GACATGCTGA CCGAAATGCC GGCAGGCCTG
CCGTCCGATC TGCTGCAACG CCGTCCGGAC ATTCTGCAAG CCGAGCACTC GCTCAAGGCC
GCCAATGCCA ACATCGGCGC AGCACGCGCA GCGTTCTTCC CAAGCATCAG CCTGACGGCC
AGTGCCGGCA CCAGCAGCAC CGAGCTGTCC GGTCTGTTCA AAGGGGGTTC GGGAACCTGG
CTGTTCCAGC CGAGCATCAA CATTCCGATC TTCAACGCCG GCAACCTGCG CGCCAGCCTG
GATTACTCGA AGATCCAGAA GGAAATCAGC GTCGCCAACT ACGAGAAGTC GATTCAGACC
GCCTTCCAGG AAGTGTCCGA CGGTCTGGCT TCACGCAAGA CCTACGACGA GCAGCTCCAG
GCGCAACGTG ACTTTGTTAC CGCCAACCAG GACTACTACC GTCTGGCCGA GCGTCGCTAC
CGCATCGGCA TCGACAGCAA CCTGACCTTC CTCGACGCCC AGCGCTCGCT GTTCAGCGCG
CAACAAACGC TGATCACCGA TCGCCTGTCG CAGCTGACCA GCGAGGTCAA CCTGTACAAG
GCCCTCGGCG GCGGCTGGTA CGAAAGGACC GGGCAGACCG AAACCATCTC CAAAGAGAAA
CCTTCGGTGC AACTGTTCTA A
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| Protein sequence | MSKSLISLAV TAFILGGCSL IPEYKQPEAP VAAQYPQGPA YSPVEGAKMA AAEQGWRHFF
NDPALQQLIE TALLNNRDLR VAALNIDAYR AQYRIQRSDL FPAVSATGSG SRQRVPADQS
QTSQSAISSS YSATLGVSAY ELDLFGRVRS LSEQALETYF SSEEARRSTQ ISLVANVANA
YMTWQADKEL LKLTQDTLKT YEESFRLTSR SNEVGVSSAL DLSQSRTAVE SARARLAQYQ
RLVAQDQNSL VLLLGTGLPD NLPASHLLDS DMLTEMPAGL PSDLLQRRPD ILQAEHSLKA
ANANIGAARA AFFPSISLTA SAGTSSTELS GLFKGGSGTW LFQPSINIPI FNAGNLRASL
DYSKIQKEIS VANYEKSIQT AFQEVSDGLA SRKTYDEQLQ AQRDFVTANQ DYYRLAERRY
RIGIDSNLTF LDAQRSLFSA QQTLITDRLS QLTSEVNLYK ALGGGWYERT GQTETISKEK
PSVQLF
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