| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4304 |
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| Symbol | |
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| ID | 1185985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4851676 |
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| End bp | 4854810 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395646 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | NP_794060 |
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| Protein GI | 28871441 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAAAT TTTTTATTGA TCGACCCATT TTTGCCTGGG TTATTGCCCT CGTGATCATG
CTGGTCGGTG CGCTGTCTAT TTCCAGCCTG CCGATCAACC AGTACCCAAG TATCGCGCCA
CCGGCCATTG CGATTCAGGT GACCTACCCG GGCGCTTCTG CGCAGACCGT GCAGGACACC
GTGGTGCAGG TCATCGAGCA GCAGCTCAAC GGCATCGACA ACTTGCGTTA TGTGAGTTCG
GAAAGTAACT CCGACGGCAG CATGACCATT ACCGCGACCT TCAATCAGGG CACCAACCCG
GATACCGCGC AGGTGCAGGT GCAGAACAAG CTCAACCTGG CGACCCCGCT GCTGCCACAG
GAAGTGCAGC AACAGGGTAT TCGCGTGACC AAGGCGGTGA AGAACTTCCT GATGGTTATC
GGCCTGGTGT CCGAAGACGG CAGCATGGGC AAGGAAGACC TGGCCAACTA CATCGTCTCG
AACATGCAGG ACCCGATTTC CCGGACCTCC GGTGTGGGCG ACTTCCAGGT GTTCGGCTCC
CAGTACGCCA TGCGCATCTG GCTCGACCCG GCCAAGCTCA ACAACTTCCA GCTGACCCCG
GTGGACGTGC GAGACGCAAT CACCGCGCAG AACGTTCAGG TGTCGTCCGG TCAGTTGGGC
GGTCTGCCCT CGATAAGCGG CCAGCAACTG AACGCCACAA TCATCGGCAA GACGCGTCTG
CAGACGGCTG AACAGTTCGG CAATATCTTT CTCAAGGTCA ACACCGACGG CTCACAGGTT
CGCCTCAAAG ACGTCGCCAC CGTGGGCCTG GGCGCAGAGA ACTACAGCAC CGACTCGCAG
TTCGACGGCA AACCGGCCTC GGGTCTGGCG ATCAAGCTGG CCACCGGCGC CAATGCGCTG
GACACCGCCA AGGCCATCCG CGCGACCGTT TCGTCGCTGG AGCCGTTTTT CCCGCCGGGC
ATGAAAGTGG TTTACCCGTA CGACACCACG CCTGTGGTGA GCGAATCGAT CAAAGGTGTG
GTTCACACCC TGATCGAAGC CATCGTGCTG GTGTTCCTGG TGATGTACCT GTTCCTACAA
AACTTCCGCG CCACCGTGAT CACCACGCTG ACGGTTCCGG TCGTACTGTT GGGCACCTTC
GGCATCCTCG CGGGCTTCGG TTTCACCATC AACACCCTGA CCATGTTCGG CATGGTACTG
GCCATCGGCT TGCTGGTGGA CGATGCGATT GTGGTGGTGG AAAACGTCGA GCGGGTGATG
GAGGAAGAAA AGCTTTCTCC GCGTGACGCA ACCATCAAAT CCATGACGCA GATCCAAGGC
GCACTGGTTG GTATTGCGCT GGTGCTGTCG GCGGTGCTGC TGCCAATGGC GTTCTTCGGC
GGCTCGACCG GTGTGATCTA CAAGCAGTTC TCGATCACCA TCGTCTCGGC CATGGCCCTG
TCGGTAGTGG TCGCGCTGAT CTTTACCCCG GCGCTGTGCG CCACCATGCT CAAGCCTATC
GACGAGAAGA CCCACGGCCA GCCCAAGCGT GGTTTCTTCG GCTGGTTCAA CCGCACCTTC
GACCGCAGCG TTGTGAGTTA CGAACGCGGC GTGGGCAACA TGCTCAAGCA CAAGTGGCTG
TCGTACCTGG GCTATATCGT GATCGTTGCC GGCATGGTCT TCATGTTCAT GCGCATTCCC
GCAGCGTTCC TTCCGGAAGA AGACCAGGGC GTTATCTTCG CTCAGATCCA GACACCGGCC
GGCTCCTCGA CCGAGCGGAC GCAAGAAGTC ATCGACAACA TGCGTGAATA CCTGCTGACC
AAGGAAAGCG GTGCAGTGAA GTCGGTGTTC TCGGTGAACG GCTTCAACTT TGCGGGCCGC
GGTCAAAGCT CGGCGATTGC ATTTGTCATG CTCAAGCCGT GGGAAGAACG TGACGCCGAA
AACAGCGTCT TCAAACTGGC AGAGCGCGCT CAGGGCTACT TCTTCAGCCT GCGTGATGCA
ATGGTGTTCG CCATCGTGCC ACCGTCGGTA CTGGAGCTGG GTAACGCGAC AGGCTTCGAC
GTCTACCTGC AGGATCAGGG CGGTGTCGGC CATGCAAAAC TGATGGAAGC ACGTAACCAG
TTCCTCGGCA TGGCCGCGCA GAGCAAGATT CTCGCCGGTG TGCGTCCGAA CGGGCTGAAC
GACGAGCCGC AGTACCAGTT GCTCATCGAC GACGAACGCG CCAGTGCGTT GGGCATTACC
CTGTCGGACA TCAACAACAC CCTGTCCATC GCGTTGGGTG GCAGCTACGT CAATGACTTC
ATCGACCGTG GCCGTGTGAA GAAGGTGTAC ATCCAGGGTG ATGCAGGTGC CCGCATGACG
CCTGAAGACT TGAAAAAATG GTACGTGCGC AACAGCGCGG GCGAAATGGT GCCGTTCTCG
GCCTTCGCCA GCGGCAAGTG GACCTACGGT TCGCCAAAAC TGTCGCGCTA CAACGGCGTG
GCGGCAGAGG AAATCCTCGG TACGCCGGCA CCGGGCTACA GCAGCGGCGA TGCAATGGCC
GAAGTTGAAG CGCTGGCCAA GAAACTGCCG CAAGGAATCG GCATCTCCTG GACCGGTCTG
TCCTACGAGG AGCGCCTGTC CGGCTCTCAG GCCCCTGCCC TTTACGCGCT GTCGTTGCTG
GTCGTCTTCC TGTGCCTGGC GGCGCTGTAT GAAAGCTGGT CGATCCCGAT CGCGGTCATT
CTCGTGGTGC CGCTGGGGGT TATCGGTGCA CTGATGGCAA CCAGCCTGCG CGGACTGTCG
AACGACGTGT TCTTCCAGGT AGGGTTGCTG GTCACAGTCG GGTTGGCGGC GAAGAACGCC
ATCCTGATCG TCGAGTTTGC CAAAGAGCTG CACGAACAGG GCAAGAGCCT CACCGATGCT
GCGATCGAAG CCTGTCGCAT GCGCCTGCGC CCGATCATCA TGACGTCCAT GGCGTTCATC
CTCGGCGTTG TGCCGCTGGC GATTTCCTCG GGCGCAGGTT CGGGCAGTCA GCATTCGATC
GGTACAGGCG TAATTGGCGG TATGATCACA GCCGTCGTTC TGGCGATCTT CTGGGTGCCA
CTGTTCTTCG TATCGATTTC AGGGCTCTTC AAGAGCAAGC AGAAACATAT TTCACACGAT
GAGGCTGGCC AATGA
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| Protein sequence | MSKFFIDRPI FAWVIALVIM LVGALSISSL PINQYPSIAP PAIAIQVTYP GASAQTVQDT
VVQVIEQQLN GIDNLRYVSS ESNSDGSMTI TATFNQGTNP DTAQVQVQNK LNLATPLLPQ
EVQQQGIRVT KAVKNFLMVI GLVSEDGSMG KEDLANYIVS NMQDPISRTS GVGDFQVFGS
QYAMRIWLDP AKLNNFQLTP VDVRDAITAQ NVQVSSGQLG GLPSISGQQL NATIIGKTRL
QTAEQFGNIF LKVNTDGSQV RLKDVATVGL GAENYSTDSQ FDGKPASGLA IKLATGANAL
DTAKAIRATV SSLEPFFPPG MKVVYPYDTT PVVSESIKGV VHTLIEAIVL VFLVMYLFLQ
NFRATVITTL TVPVVLLGTF GILAGFGFTI NTLTMFGMVL AIGLLVDDAI VVVENVERVM
EEEKLSPRDA TIKSMTQIQG ALVGIALVLS AVLLPMAFFG GSTGVIYKQF SITIVSAMAL
SVVVALIFTP ALCATMLKPI DEKTHGQPKR GFFGWFNRTF DRSVVSYERG VGNMLKHKWL
SYLGYIVIVA GMVFMFMRIP AAFLPEEDQG VIFAQIQTPA GSSTERTQEV IDNMREYLLT
KESGAVKSVF SVNGFNFAGR GQSSAIAFVM LKPWEERDAE NSVFKLAERA QGYFFSLRDA
MVFAIVPPSV LELGNATGFD VYLQDQGGVG HAKLMEARNQ FLGMAAQSKI LAGVRPNGLN
DEPQYQLLID DERASALGIT LSDINNTLSI ALGGSYVNDF IDRGRVKKVY IQGDAGARMT
PEDLKKWYVR NSAGEMVPFS AFASGKWTYG SPKLSRYNGV AAEEILGTPA PGYSSGDAMA
EVEALAKKLP QGIGISWTGL SYEERLSGSQ APALYALSLL VVFLCLAALY ESWSIPIAVI
LVVPLGVIGA LMATSLRGLS NDVFFQVGLL VTVGLAAKNA ILIVEFAKEL HEQGKSLTDA
AIEACRMRLR PIIMTSMAFI LGVVPLAISS GAGSGSQHSI GTGVIGGMIT AVVLAIFWVP
LFFVSISGLF KSKQKHISHD EAGQ
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