| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4303 |
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| Symbol | |
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| ID | 1185984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4850512 |
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| End bp | 4851672 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395645 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | NP_794059 |
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| Protein GI | 28871440 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATTCA AGCCAGCTGT TACCGTTCTG GTCACTGCCG TCGCCCTGGC AACCCTGCTC
AGTGGCTGTA GCAAGAAGGA ACAGGCGGCC CCGCCTGCGC AAACCCCTCA GGTCGGCGTC
GTTACCCTCA AAGCACAGCC CTACACCCTG ACCACCGAGC TTCCGGGCAG GACGACCGCT
TTCCGTGTGG CCGAGGTCCG CCCTCAGGTC AACGGCATCA TTCTCAAGCG TCTGTTCACC
GAAGGTGGTG ACGTCAAGGC CGGTCAGCAG CTGTATCAGA TCGACCCGGC TATCTATGAA
GCCAACGCCA ACAGTGCCAA GGCGACCCTG CAGTCTGCCA AGTCGATGTC TGATCGCTAC
AAGCAACTGG TCAACGAACA GGCGGTGAGT CGTCAGGAAT ACGACACCGC CCTGGCATCC
ACTCAGGAAG CACAGGCAGC GCTGCAGACT TCGCAGATCA ACCTGCGCTT CACCAAGGTG
CTGGCGCCGA TCTCGGGCCG CATCGGGCGC TCTGCCGTTA CCGAAGGCGC GCTGGTCAGC
AGTGCCCAGG CAGACGCAAT GGCAACCATT CAGCAGCTTG ATCCGATCTA CGTGGACGTA
GTCCAGTCTT CCGCAGACAT GCTCAAGCTG CGCAATGACC TGGACAGCGG CAAACTGCAG
AAGTCCGGCG ACAACGCCGC CAAGGTCAAG CTGACCCTGG AAGACAACAG CGTTTACGCT
CAGGAAGGCA AACTGGAGTT CTCCGAAGTG TCGGTTGACC AGACCACCGG TTCCGTCACT
CTGCGCGCAG TCTTCCCCAA CCCTGAACAC CGCTTGCTGC CCGGCATGTT CGTTCACGCG
CAATTGCAGG CAGGCGTCAG TGCGAAAGCC ATTCTGGCAC CGCAACAAGG CGTGACCCGC
GACCTGAAAG GCACGCCGAC CGCCATGATT GTCAATCAGG ACAACAAGGT TGAATTGCGC
ACACTGGTCG CCAACCGCAC CGTGGGCAGC GACTGGCTGA TCGAGGACGG CCTGAAAGAA
GGCGATCGCG TGATCACCGA AGGTCTGCAA TACGTCAAAC CAGGCGCAGA AGTGAAAGCT
GCCGAAGCGA CCAACGTCAA AGGAGCAAAC CCGGCACCTG CCCCGGCCAC TGAAAAAGCC
GCAGGCAGCA AAGGGGAGTA A
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| Protein sequence | MQFKPAVTVL VTAVALATLL SGCSKKEQAA PPAQTPQVGV VTLKAQPYTL TTELPGRTTA
FRVAEVRPQV NGIILKRLFT EGGDVKAGQQ LYQIDPAIYE ANANSAKATL QSAKSMSDRY
KQLVNEQAVS RQEYDTALAS TQEAQAALQT SQINLRFTKV LAPISGRIGR SAVTEGALVS
SAQADAMATI QQLDPIYVDV VQSSADMLKL RNDLDSGKLQ KSGDNAAKVK LTLEDNSVYA
QEGKLEFSEV SVDQTTGSVT LRAVFPNPEH RLLPGMFVHA QLQAGVSAKA ILAPQQGVTR
DLKGTPTAMI VNQDNKVELR TLVANRTVGS DWLIEDGLKE GDRVITEGLQ YVKPGAEVKA
AEATNVKGAN PAPAPATEKA AGSKGE
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