| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4293 |
|---|
| Symbol | |
|---|
| ID | 1185974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4836767 |
|---|
| End bp | 4839148 |
|---|
| Gene Length | 2382 bp |
|---|
| Protein Length | 793 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637395635 |
|---|
| Product | sensory box histidine kinase/response regulator |
|---|
| Protein accession | NP_794049 |
|---|
| Protein GI | 28871430 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0784] FOG: CheY-like receiver
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCGGC TTATCCGGGA GACAGACTGG TCGACGTCTG CGCTTGGACC GAAGCAAGCA
TGGCCCACCG CGCTACTGTC TTCGCTGAAC CTGATGCTCA GTTGCCCGGA CAGCATGTAC
CTGCTGTGGG GAGCGGATTT CACCTTGTTC TTCAATGATG CCTACCGCCA GGTCTTGCCC
GTATCCGCAC ACCAAGCACA AGGGCAACCG ATCGCTGCGG TTTGGGGCGA TGCGTGGGAA
GCCGTGCGTC CGCTGGCCGA GCAGGCACTC GCCGGACACA GCTGCCGGTC CGATGACATT
CAGCGCGTGC TCGTGCGCGA CGGCAAGTCC GAGCAGACCT GGTGGTCGCT GTCCTATTCG
CCTCTTTATG GTGATAGCGG CCTGATTGAA GGCGTGTTCT GCCGGGTCAA CGAAACCACG
TCTCAGGTCA CCGCTCAGGC CCGGCAGTCC CAGAACGAAG CGTTTACCAA TCGGGTTCTG
TCGAGCATCA ACGATTGCAT CAAGGTGCTG GATCTTGATT CGCGCCTGAC GTTCATGAGC
GAAGGCGGCC AGCGCATCAT GGAAGTCAGC GATTTCAACG AGATTGTCGG CTGCCCCTGG
CCTGACTTCT GGCAGGATCA GGGCAACCTG GACGCCATCG CGGCAGTGGA AGCTGCGCGC
GACGGTCAGA ACGCAAGCTT TATGGGCTCT GCGCAGACCA TGGCCGGCAC CGTCAAATGG
TGGCACGTGC AGGTCAGTCC GATTTTCGGC AAAGACGGCA AGCCTGAGAA AATTCTTTGC
GTGTCTCGGG ACATGACCCA GCTCAGAAAT GCGGAAGAGG CCCTGCGCAC GCTCAACGAG
ACGCTTGAGC AACGCGTGGT CGAGCGTACC CAGGACCGCG ACCGGATCTG GCGGCTATCG
ACCGACCTGA TGCTGGTCGC GCAGTTCGAC GGGATCATAT CCGCGGTCAA CCCGGCGTGG
ACCCAGGCAC TGGGCTGGTC TGAAGAACAA CTGCTCGACA GCCAGTTTCT AGGGCTGGTG
CACCCGGACG ATGTCAACAG TACCCTGGCG GCCATGAGCG GCCTGGAAAA CGGCCAGAAT
ATTCCGCACT TCAAAAATCG CTATCGCCAC ATGGACGGCT CATACCGGAC CATTTCCTGG
ACGGCAGTGC CGGACAAACA GTTTATCCAT GCGGTCGGCC GCGACATCCA GGCCGAAGAA
GAGGCCAACG AAGCGCTGCG GCTTTCTCGG GAGGCCCTGC ATCAAGCGCA GAAACTGGAA
GCCATCGGCC AGCTGACCGG CGGTGTAGCG CATGATTTCA ATAACCTGCT GACCGTCATC
CGCTCGTGCA GCGATCTGCT GAAATCTGCA AACCTTGAAG AGCCGCGCCG GGTTAAATAC
GTCGAGGCCA TTTCCAGCAC CGTAGACCGC GCGGCGCGCC TGACCGGCCA ATTGCTGGCC
TTTGCCCGCC GCCAGGCATT GCAGCCCGAA GTGTTCGATG TCTGCAAAAG CGTGGCACGC
ATCGGCGAAA TGATGGACAC ACTCACCGGC TCGCGCATTC AGGTGCACAT CGACCTGCCT
GCCGAACCGT GCTTTATTTT TGCCGATGGC AGCCAGTTCG ACACCGCACT GGTCAACATG
GTGGTCAACG CCCGTGATGC GATGTCAGGC TCGGGCCGGC TCGTCATCAA GGTTGACTGC
GTGACCTGTT CGTCGGCCAG CCTGCCCTCC TCGCTCAACG CGGGCGACTA CGTGACGGTG
TCGCTGACCG ACACGGGTGC AGGCATTGCC AAGGATAAAC TGGGGCTGAT CTTCGAGCCC
TTCTATACCA CCAAGAGCGT GGGCCAGGGC ACAGGGCTCG GCCTGTCGCA GGTGTTCGGT
TTTGCCAAGC AATCGGGCGG TGAAGTTCTG GTTGAAAGCG AACTGGGCAG CGGCAGCCGT
TTCACCCTGT GCCTGCCCAG TGTCGAAGCT CACGAGCGAG CCGCAGAAGA CAACAACCTG
ACGCTCGCCG CACTGCCCGG TTTATGCGTA CTGATGGTCG AAGACAATCA GGACATCGGC
ACTTACACAC GTCCGATGCT CGAACAGCTG GGTTTTCAAG TGCTCTGGGT ATCGAGTGCC
AGTGATGCGT TACAGGAGCT TTCCGGCAAC CCGGAAAACT TTCATGTGGT GTTCTCCGAC
ATCGCCATGC CGGGCATGAG CGGGCTGGAG CTGTATGCCG AAATCGAGGC GCGCTACCCC
TGGATGCCGG TGGTCCTGAC GACGGGCTAC AGCACTGAGT TTGCAACACT CGCGCAGGAT
GAAACACACC GCTTCGACCT GTTGCAGAAA CCCTATTCCA GAGACGACCT GGCAGCGATG
CTGCACAAGG CCGTGAGCCG CAGCGTGGAA CACACGTCGT AA
|
|---|
| Protein sequence | MGRLIRETDW STSALGPKQA WPTALLSSLN LMLSCPDSMY LLWGADFTLF FNDAYRQVLP
VSAHQAQGQP IAAVWGDAWE AVRPLAEQAL AGHSCRSDDI QRVLVRDGKS EQTWWSLSYS
PLYGDSGLIE GVFCRVNETT SQVTAQARQS QNEAFTNRVL SSINDCIKVL DLDSRLTFMS
EGGQRIMEVS DFNEIVGCPW PDFWQDQGNL DAIAAVEAAR DGQNASFMGS AQTMAGTVKW
WHVQVSPIFG KDGKPEKILC VSRDMTQLRN AEEALRTLNE TLEQRVVERT QDRDRIWRLS
TDLMLVAQFD GIISAVNPAW TQALGWSEEQ LLDSQFLGLV HPDDVNSTLA AMSGLENGQN
IPHFKNRYRH MDGSYRTISW TAVPDKQFIH AVGRDIQAEE EANEALRLSR EALHQAQKLE
AIGQLTGGVA HDFNNLLTVI RSCSDLLKSA NLEEPRRVKY VEAISSTVDR AARLTGQLLA
FARRQALQPE VFDVCKSVAR IGEMMDTLTG SRIQVHIDLP AEPCFIFADG SQFDTALVNM
VVNARDAMSG SGRLVIKVDC VTCSSASLPS SLNAGDYVTV SLTDTGAGIA KDKLGLIFEP
FYTTKSVGQG TGLGLSQVFG FAKQSGGEVL VESELGSGSR FTLCLPSVEA HERAAEDNNL
TLAALPGLCV LMVEDNQDIG TYTRPMLEQL GFQVLWVSSA SDALQELSGN PENFHVVFSD
IAMPGMSGLE LYAEIEARYP WMPVVLTTGY STEFATLAQD ETHRFDLLQK PYSRDDLAAM
LHKAVSRSVE HTS
|
|---|
| |