| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4243 |
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| Symbol | |
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| ID | 1185923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4775685 |
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| End bp | 4779365 |
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| Gene Length | 3681 bp |
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| Protein Length | 1226 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637395589 |
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| Product | urea amidolyase-related protein |
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| Protein accession | NP_794004 |
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| Protein GI | 28871385 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1038] Pyruvate carboxylase
[COG1984] Allophanate hydrolase subunit 2
[COG2049] Allophanate hydrolase subunit 1
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGACA AACTGCTGAT CGCCAACCGT GGCGCCATTG CCTGCCGCAT TCTGCGGACC
CTGCGCACTT TGCAGGTCAA AGGTGTGGCC GTGTATTGCG AAGCTGACGC TGCCAGCTTG
CACCTGATGC AGGCCGACGA AGCCCACAGC CTGGGCGAAG GCGGCGCGGC CGGGACGTAT
CTGGCGGTGG ACAAAATCCT CGCCATCGCC AAAGCCAGCG GCGCCAATGC CATTCATCCG
GGTTACGGCT TTCTCTCCGA AAATGCTGCA TTTGCCCAGG CCTGCGAAGA CGCCGGTATC
GCCTTCGTCG GCCCGACGCC CGAGCAACTG CGGGTGTTTG GCCTCAAGCA CACGGCCCGC
GCGCTGGCCC GACAACACGG CGTGCCGCTG CTGGAAGGCA CCGAACTGCT CGACAGCCTG
GAATCGGCCA TCGCCGCAGC GCGTGATATC GGCTATCCGG TCATGCTCAA AAGCACGGCG
GGCGGCGGCG GTATCGGCAT GCGCGTGTGC CGCAGTGCCG AGGAGCTGGC GGACTCGTTC
GAGGCCGTCA AACGCCTCGG CCAGAACAAT TTCAGCGACG CGGGCGTGTT CATCGAGAAA
TACATCCAGC GCGCCCGCCA TCTGGAAGTG CAGGTGTTCG GCGACGGCCA GGGCGAGGTG
CTGGCCCTGG GCGTGCGCGA CTGCTCGGTG CAGCGCCGCA ACCAGAAAGT ACTGGAAGAA
ACCCCGGCCC CGAACCTGCC GGAGGGCATG GCCGATGAGC TGTGCGCGGC GGCGATCAAG
CTGGCCAAAG CGGTCAATTA TCGCAGCGCC GGGACCGTCG AGTTTGTGTT CGACAGTGAA
GACCAGCGCT TCTATTTTCT GGAAGTGAAC ACGCGCCTGC AGGTCGAGCA CGGCGTTACC
GAACAGGTGT GGGGCGTCGA TCTGGTCGGC TGGATGGTGC AACTGGCTGC CGGTGATCTG
CCGCCGCTCA GTCAGTTGCA GGCCAGCTTG CAACCGGTCG GCCATGCCAT TCAGGCGCGG
CTGTATGCCG AAGACCCAGG CCGCGATTTC CAGCCCTGCC CCGGCCTGCT GACCGCAGTG
AATTTTCCGC CTGCTGATGG GCATGCGCTG CGCATCGATA CCTGGGTCGA AGCCGGTTGC
GAAATACCGC CGTATTTCGA CCCGATGATC GCCAAGCTGA TCAGCTGGGC GCCCACCCGC
GATCAAGCCA GCGCCGGGCT GGCTACCGCG CTTCAGCATA CGCGCCTGTA TGGCGTAGAG
ACCAACCGAG ACTACCTGCG TCAAATCATC GATGACGCGC CCTTCGCCGG TGGTCAGCCG
TGGACGCGTT GCCTGGAAGG TCTGGTGTAT CGCGCCGATA CGTTCGAGGT GTTAAGCGGC
GGCACGCAAA CCAGCGTTCA GGATTATCCC GGCCGGCTGG GCTACTGGGC GGTCGGTGTA
CCGCCGTCCG GTCCGATGGA CAGCCGCGCC TTGCGTCAGG GCAACCGGCT GCTGGGCAAC
GCCGAGGGCT GCGCCGCGCT GGAAATCACC ATGAGCGGGC CGCTGCTGCG CTTCAACACA
GACGCGGTGA TCGCCGTGAC CGGCGCGCAT ATTCCAATCA CGCTGGATGG CGAGTCCTGC
GCCATGAACA CCGCGTTGCT GGTGCGTGCC GGTTCGACCC TTGCGCTGGG CACCATTGCC
GGGGCGGGTG TACGCAGTTA CCTGTGCGTG CGTGGCGGGC TGGACGTGCC GGATTATCTG
GGCAGCAAAA GCACCTTTAC CCTTGGCCAG TTCGGCGGTC ATGGCGGTCG GGCCTTACGC
GCGGGCGATG TGCTGCATAT CGCGCGGTTG GTTGATCGCA CTGCCGGGCA AAAAATCGCC
GATGAGCAAC TCGACGCGCT GCAAGACGTT CGCCAGATTC GAGTGATCTA CGGCCCGCAC
GCCGCGCCGG AATACTTCAC CGAAAGCTAT ATCGAGACGT TCTTTGCGAC CGACTGGGAA
GTGCATTTCA ACTCCAGCCG CACCGGCGTG CGCCTGATCG GCCCCAAGCC TGAATGGGTC
CGCGCGGATG GTGGTGAGGC GGGTCTGCAT CCGTCCAACA TCCACGACAA CCCGTATGCC
ATTGGCGCGG TGGATTTTAC GGGCGACATG CCGGTCATCC TAGGCCCGGA TGGCCCGAGC
CTGGGCGGTT TCGTGTGCCC GGTGACCATC ATCGAAGCGG ACTTGTGGCA GTTGGGACAG
TTGAAGGCCG GGGACAAGGT CAGGTTTTAT CCAGTGAGTG TCGAGGCGTG TCATGCAGCA
ATGAACTCAC AAGGCCCGCT CCCACAAGGT CCGCTTAACA CCAGTGGGAG CGGACTTGTC
CGCGAAGGCA CTATTCCAGA CACAGAAAAT GCATCGGATG TACCGGCCTC TTCGCGAGCA
AGCTCGCTCC CACACAAGGT AGCCAGCCTG CCCAGCCCGA TCATTCTCGA CATCGGTCAG
GGCGACAAAC GCCTCGTTGC GCGGCTGTCC GGCGACACTC ACCTGCTGCT GGAAATCGGC
GCGCCCGAGC TGGATCTGGT GCTGCGGCTG CGCGGCCATG CGTTGATGCT GGCGCTGGAA
GCCAAGGCGC TGGCAGGGGT GATCGACCTG ACGCCGGGCA TTCGCTCGCT GCAAGTCCAC
TATCGCCCCG AGCAACTGCC GCTTGATCAA CTGCTCGTCA TTATTGCTGG CGAATGGGAC
GCCGTGTGTG CAGCGAAAGA CCTGCAAGTC GCTTCACGCA TTGTCCATCT GCCACTGTCC
TGGGACGATC CGGCCTGCCA GCTGGCCATC GAGAAATACA TGACCACCGT GCGCAAGGAC
GCGCCGTGGT GCCCGAGCAA TCTGGAGTTC ATCCGGCGCA TCAACGACCT GCCCAACCTC
AACGAAGTGC AACGCACGGT GTTCGACGCC AGCTATCTGG TCATGGGCCT GGGCGATGTG
TACCTGGGCG CGCCGGTTGC CACCCCGCTG GACCCGCGTC ACCGTCTGGT GACCACCAAG
TACAACCCGG CGCGTACCTG GACTGCCGAA AACTCGGTCG GCATCGGTGG TGCCTATATG
TGTGTGTATG GCATGGAAGG CCCCGGCGGT TATCAATTTG TCGGGCGCAC GTTGCAGATG
TGGAATCGCT ACCGCGAAGT CGCAGCCTTT GAAGGCAAGC CGTGGCTGTT GCGCTTCTTC
GATCAGATCC GCTTCTACCC GGTCAGCGCC GATGAACTGC TGCGCATTCG CCGCGATTTT
CCGCTGGGCC GTTTTGCGCT GAACATCGAA CACAGCACTC TGAACCTGGC CGATTACCAG
ACCTTTCTGA CGCGTGAAGC TGACGGCATC GCGGCGTTCC GCGCTCAACA ACAGGGCGCA
TTCAACGCCG AACGTGAACG CTGGATTGCC AACGGCCAGG CTGATTTCCA AAGCGACGAA
GGTGTCGCGC CATACATCGA AGAACTGCCG CTGCAAGCGG GCCAGCAAGG CGTCGAGAGC
CACATTGCCG GTAACCTCTG GCAGGTCCAG GTGCAACCCG GCGAGCGTGT CGAAGCAGGC
GATGTGCTGG TGATTCTGGA GTCGATGAAG ATGGAAATCC CGTTGCTCGC ACCGGTCGCA
GGCGTGGTGC AGGAAGTGCG GGTGCAACCT GGCTCGGCAG TCCGCGCCGG GCAACGGGTC
GTAGTGCTGG CAGCAGACTG A
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| Protein sequence | MFDKLLIANR GAIACRILRT LRTLQVKGVA VYCEADAASL HLMQADEAHS LGEGGAAGTY
LAVDKILAIA KASGANAIHP GYGFLSENAA FAQACEDAGI AFVGPTPEQL RVFGLKHTAR
ALARQHGVPL LEGTELLDSL ESAIAAARDI GYPVMLKSTA GGGGIGMRVC RSAEELADSF
EAVKRLGQNN FSDAGVFIEK YIQRARHLEV QVFGDGQGEV LALGVRDCSV QRRNQKVLEE
TPAPNLPEGM ADELCAAAIK LAKAVNYRSA GTVEFVFDSE DQRFYFLEVN TRLQVEHGVT
EQVWGVDLVG WMVQLAAGDL PPLSQLQASL QPVGHAIQAR LYAEDPGRDF QPCPGLLTAV
NFPPADGHAL RIDTWVEAGC EIPPYFDPMI AKLISWAPTR DQASAGLATA LQHTRLYGVE
TNRDYLRQII DDAPFAGGQP WTRCLEGLVY RADTFEVLSG GTQTSVQDYP GRLGYWAVGV
PPSGPMDSRA LRQGNRLLGN AEGCAALEIT MSGPLLRFNT DAVIAVTGAH IPITLDGESC
AMNTALLVRA GSTLALGTIA GAGVRSYLCV RGGLDVPDYL GSKSTFTLGQ FGGHGGRALR
AGDVLHIARL VDRTAGQKIA DEQLDALQDV RQIRVIYGPH AAPEYFTESY IETFFATDWE
VHFNSSRTGV RLIGPKPEWV RADGGEAGLH PSNIHDNPYA IGAVDFTGDM PVILGPDGPS
LGGFVCPVTI IEADLWQLGQ LKAGDKVRFY PVSVEACHAA MNSQGPLPQG PLNTSGSGLV
REGTIPDTEN ASDVPASSRA SSLPHKVASL PSPIILDIGQ GDKRLVARLS GDTHLLLEIG
APELDLVLRL RGHALMLALE AKALAGVIDL TPGIRSLQVH YRPEQLPLDQ LLVIIAGEWD
AVCAAKDLQV ASRIVHLPLS WDDPACQLAI EKYMTTVRKD APWCPSNLEF IRRINDLPNL
NEVQRTVFDA SYLVMGLGDV YLGAPVATPL DPRHRLVTTK YNPARTWTAE NSVGIGGAYM
CVYGMEGPGG YQFVGRTLQM WNRYREVAAF EGKPWLLRFF DQIRFYPVSA DELLRIRRDF
PLGRFALNIE HSTLNLADYQ TFLTREADGI AAFRAQQQGA FNAERERWIA NGQADFQSDE
GVAPYIEELP LQAGQQGVES HIAGNLWQVQ VQPGERVEAG DVLVILESMK MEIPLLAPVA
GVVQEVRVQP GSAVRAGQRV VVLAAD
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