| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4221 |
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| Symbol | |
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| ID | 1185901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4754310 |
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| End bp | 4755749 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395567 |
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| Product | serine protease, MucD |
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| Protein accession | NP_793982 |
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| Protein GI | 28871363 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.560498 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGACAC CACGCATGAA ATCCTACTTT TCATTGATCG CCGCCGTGCT GATGCTCGGC
CAGGTCGCTA CAGCCCAGGC AGAAAACCTG CCGGACTTTA CCGGGCTGGT CGAGCAGGCC
TCGCCTGCGG TAGTGAACAT CAGTACACGG CAGAAACTGC CGGATCGCGC CGTTGCCAAC
AAGCAGATGC CTGATCTGGA AGGCTTGCCG CCGATGTTGC GCGAATTTCT CGAGCGCAGC
ATGCCACCAG GTTCGCGCGC ACCAGGAGCC GGCAAGGGTG ATCGCCAGCG CGAGGCTCAG
TCGTTGGGTT CGGGCTTTAT CATCTCCCCC GATGGCTATG TGCTGACCAA CAACCATGTG
ATCGACGGTG CCGACGAAAT TCTCGTGCGC CTCTCTGACC GCAGCGAATT GAAAGCCAAG
CTGATCGGCA CCGACCCGCG CACCGATGTC GCCGTGCTGA AAATCGAAGG CAAGGACCTG
CCGACCGCCA AGCTGGGTAA TTCCAACACG CTCAAAGTGG GCGAGTGGGT CTTGGCGATC
GGTTCGCCGT TCGGTTTCGA TCATTCGGTG ACCAAAGGTA TCGTCAGCGC AAAGGGCCGC
AGTCTGCCCA ATGACACCTA TGTGCCGTTC ATTCAGACCG ACGTAGCGAT CAACCCGGGT
AACTCGGGCG GTCCGCTGTT CAACATGGCG GGCGAAGTGG TCGGGATCAA CTCGCAGATC
TTCACCCGCT CGGGCGGCTT CATGGGCCTG TCGTTCGCCA TTCCGATCGA TGTCGCCATG
GACGTTGCCA ACCAGCTCAA GGCCAGTGGC AAAGTCAGCC GCGGCTGGTT GGGCGTGGTT
ATTCAGGAAG TGAACAAGGA CCTGGCGGAG TCGTTCGGTC TGGACAAGCC CGCCGGTGCA
CTGGTTGCAC AGGTGCTTGA AGATGGTCCG GCGGCCAAGG GTGGTTTGCA GGTCGGTGAC
GTTATTCTCA GTGCCAACGG CCAGCCAGTC GTCATGTCGG CTGACCTGCC ACACCTGATC
GGCAACCTCA AGGACGGCAG CAAGGCCGAG CTTGAAGTGA TTCGTGATGG CAAGCGTCAG
AAACTGACCG TCACTGTCGG CGCGCTGCCG GATGAAGGCC TGGAAATGGG CGGTGCTGCA
GGCGCCAGTG CCGAGCGCAG CAGCAACCGT CTGGGCGTTT CGGTGATCGA GCTGACCGCC
GAGCAGAAGA AGACGCTGGA CATCAAGGGT GGCGTGGCCA TCAAGGAAGT CACTGATGGT
CCTGCATCGC TGATCGGTTT GCAGCCGGGT GATGTCATCA CTCACCTGAA CAATCAGGCG
ATCACGTCCG GGAAGCAATT CACTGATGTG GCGAAAAGCC TGCCCAAGGA CCGTTCTGTC
TCGATGCGCG TACTGCGTCA GGGCCGAGCG ACCTTCATTA CCTTCAAACT GTCGGAATAA
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| Protein sequence | MSTPRMKSYF SLIAAVLMLG QVATAQAENL PDFTGLVEQA SPAVVNISTR QKLPDRAVAN
KQMPDLEGLP PMLREFLERS MPPGSRAPGA GKGDRQREAQ SLGSGFIISP DGYVLTNNHV
IDGADEILVR LSDRSELKAK LIGTDPRTDV AVLKIEGKDL PTAKLGNSNT LKVGEWVLAI
GSPFGFDHSV TKGIVSAKGR SLPNDTYVPF IQTDVAINPG NSGGPLFNMA GEVVGINSQI
FTRSGGFMGL SFAIPIDVAM DVANQLKASG KVSRGWLGVV IQEVNKDLAE SFGLDKPAGA
LVAQVLEDGP AAKGGLQVGD VILSANGQPV VMSADLPHLI GNLKDGSKAE LEVIRDGKRQ
KLTVTVGALP DEGLEMGGAA GASAERSSNR LGVSVIELTA EQKKTLDIKG GVAIKEVTDG
PASLIGLQPG DVITHLNNQA ITSGKQFTDV AKSLPKDRSV SMRVLRQGRA TFITFKLSE
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