Gene PSPTO_4221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4221 
Symbol 
ID1185901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4754310 
End bp4755749 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content60% 
IMG OID637395567 
Productserine protease, MucD 
Protein accessionNP_793982 
Protein GI28871363 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.560498 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGACAC CACGCATGAA ATCCTACTTT TCATTGATCG CCGCCGTGCT GATGCTCGGC 
CAGGTCGCTA CAGCCCAGGC AGAAAACCTG CCGGACTTTA CCGGGCTGGT CGAGCAGGCC
TCGCCTGCGG TAGTGAACAT CAGTACACGG CAGAAACTGC CGGATCGCGC CGTTGCCAAC
AAGCAGATGC CTGATCTGGA AGGCTTGCCG CCGATGTTGC GCGAATTTCT CGAGCGCAGC
ATGCCACCAG GTTCGCGCGC ACCAGGAGCC GGCAAGGGTG ATCGCCAGCG CGAGGCTCAG
TCGTTGGGTT CGGGCTTTAT CATCTCCCCC GATGGCTATG TGCTGACCAA CAACCATGTG
ATCGACGGTG CCGACGAAAT TCTCGTGCGC CTCTCTGACC GCAGCGAATT GAAAGCCAAG
CTGATCGGCA CCGACCCGCG CACCGATGTC GCCGTGCTGA AAATCGAAGG CAAGGACCTG
CCGACCGCCA AGCTGGGTAA TTCCAACACG CTCAAAGTGG GCGAGTGGGT CTTGGCGATC
GGTTCGCCGT TCGGTTTCGA TCATTCGGTG ACCAAAGGTA TCGTCAGCGC AAAGGGCCGC
AGTCTGCCCA ATGACACCTA TGTGCCGTTC ATTCAGACCG ACGTAGCGAT CAACCCGGGT
AACTCGGGCG GTCCGCTGTT CAACATGGCG GGCGAAGTGG TCGGGATCAA CTCGCAGATC
TTCACCCGCT CGGGCGGCTT CATGGGCCTG TCGTTCGCCA TTCCGATCGA TGTCGCCATG
GACGTTGCCA ACCAGCTCAA GGCCAGTGGC AAAGTCAGCC GCGGCTGGTT GGGCGTGGTT
ATTCAGGAAG TGAACAAGGA CCTGGCGGAG TCGTTCGGTC TGGACAAGCC CGCCGGTGCA
CTGGTTGCAC AGGTGCTTGA AGATGGTCCG GCGGCCAAGG GTGGTTTGCA GGTCGGTGAC
GTTATTCTCA GTGCCAACGG CCAGCCAGTC GTCATGTCGG CTGACCTGCC ACACCTGATC
GGCAACCTCA AGGACGGCAG CAAGGCCGAG CTTGAAGTGA TTCGTGATGG CAAGCGTCAG
AAACTGACCG TCACTGTCGG CGCGCTGCCG GATGAAGGCC TGGAAATGGG CGGTGCTGCA
GGCGCCAGTG CCGAGCGCAG CAGCAACCGT CTGGGCGTTT CGGTGATCGA GCTGACCGCC
GAGCAGAAGA AGACGCTGGA CATCAAGGGT GGCGTGGCCA TCAAGGAAGT CACTGATGGT
CCTGCATCGC TGATCGGTTT GCAGCCGGGT GATGTCATCA CTCACCTGAA CAATCAGGCG
ATCACGTCCG GGAAGCAATT CACTGATGTG GCGAAAAGCC TGCCCAAGGA CCGTTCTGTC
TCGATGCGCG TACTGCGTCA GGGCCGAGCG ACCTTCATTA CCTTCAAACT GTCGGAATAA
 
Protein sequence
MSTPRMKSYF SLIAAVLMLG QVATAQAENL PDFTGLVEQA SPAVVNISTR QKLPDRAVAN 
KQMPDLEGLP PMLREFLERS MPPGSRAPGA GKGDRQREAQ SLGSGFIISP DGYVLTNNHV
IDGADEILVR LSDRSELKAK LIGTDPRTDV AVLKIEGKDL PTAKLGNSNT LKVGEWVLAI
GSPFGFDHSV TKGIVSAKGR SLPNDTYVPF IQTDVAINPG NSGGPLFNMA GEVVGINSQI
FTRSGGFMGL SFAIPIDVAM DVANQLKASG KVSRGWLGVV IQEVNKDLAE SFGLDKPAGA
LVAQVLEDGP AAKGGLQVGD VILSANGQPV VMSADLPHLI GNLKDGSKAE LEVIRDGKRQ
KLTVTVGALP DEGLEMGGAA GASAERSSNR LGVSVIELTA EQKKTLDIKG GVAIKEVTDG
PASLIGLQPG DVITHLNNQA ITSGKQFTDV AKSLPKDRSV SMRVLRQGRA TFITFKLSE