| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4219 |
|---|
| Symbol | lepB |
|---|
| ID | 1185899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4751478 |
|---|
| End bp | 4752332 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637395565 |
|---|
| Product | signal peptidase I |
|---|
| Protein accession | NP_793980 |
|---|
| Protein GI | 28871361 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0681] Signal peptidase I |
|---|
| TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0233251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTAA ATTTCCCGCT GTTGTTGGTC ATCGCTGTCT TCGTCTGTGG CGTGCTTGCA
CTGATTGATC TGGTCTTCCT GGCGCCGCGT CGCCGGGTTG CCATTTCCAA CTATCAGGGT
AGCGTCGGAG AACCTGACAT TGCTGTCGTC GAGCGCTTGA ACAAGGAGCC GTTGCTGGTT
GAATACGGCA AGTCGTTCTT CCCGGTGCTG TTCATCGTGC TGGTGCTTCG ATCGTTTCTG
GTAGAGCCAT TCCAGATCCC TTCGGGCTCC ATGAAACCGA CGCTGGACGT GGGCGATTTC
ATTCTGGTCA ACAAGTTCTC GTATGGCATC CGCCTGCCGG TACTGGACCA GAAAGTCATC
GAGCTCGGTG ATCCGCAGCG TGGCGATGTA ATGGTGTTCC GCTACCCAAG CGACCCGAGC
GTCAACTACA TCAAGCGTGT GGTCGGTCTG CCGGGTGATC GCATCCGCTA CACCAGCGAC
AAGCGGTTGT TCATCAATGG CGAGCTGGTG GCCAAGAAAC TGATCGGCAC CGAACCCGGC
ACACTGGGCA GTGCAGAGCT GTACGAAGAG CAACTGGGCA CCGTGGAACA CCAGATCCGT
CAGGAAATGA GCCGTTACCG TGCGCCGCCT GACAGCGAAT GGACCGTCCC GGCTGCGCAC
TACTTCATGA TGGGCGACAA CCGCGACAAC TCCAATGACA GCCGTTACTG GGATGATCCC
AACATTCCCA AGGACGAGCT GGGCATGGTT CCGGACAAGA ACATCGTCGG CAAGGCCTTC
GCTGTCTGGA TGAGCTGGCC GGAGCCGAAA TTGAGTCACT TCCCTAATTT TGCACGCGTA
GGGTTGATCA AGTAA
|
|---|
| Protein sequence | MSLNFPLLLV IAVFVCGVLA LIDLVFLAPR RRVAISNYQG SVGEPDIAVV ERLNKEPLLV
EYGKSFFPVL FIVLVLRSFL VEPFQIPSGS MKPTLDVGDF ILVNKFSYGI RLPVLDQKVI
ELGDPQRGDV MVFRYPSDPS VNYIKRVVGL PGDRIRYTSD KRLFINGELV AKKLIGTEPG
TLGSAELYEE QLGTVEHQIR QEMSRYRAPP DSEWTVPAAH YFMMGDNRDN SNDSRYWDDP
NIPKDELGMV PDKNIVGKAF AVWMSWPEPK LSHFPNFARV GLIK
|
|---|
| |