Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4180 |
Symbol | metR |
ID | 1185860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4710627 |
End bp | 4711544 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637395526 |
Product | transcriptional activator MetR |
Protein accession | NP_793941 |
Protein GI | 28871322 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.439628 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTTGAAA TACGCCACCT CAAAACCTTG CACGCCCTGC GCGAGGCCGA CAGCCTTGTG GATGCCGCTG AACGCCTGCA CCTGACGCAG TCGGCGCTGT CCCATCAGTT CAAAGAGCTG GAAGAGCGCA TGGGCATGCC ACTGTTTGTG CGCAAGACCA AGCCGGTGCG CTTCACCAGC GCCGGTTTGC GCCTGCTGCA ACTGGCGGAC TCGATGCTGC CGCAACTGCG CAGTGCCGAG CGCGACATCG CCCGTCTGGC GGGCGGCACG GCGGGACGGC TGCACATGGC GATCGAGTGC CACAGTTGCT TTCAGTGGCT GATGCCAACC ATCGACCAGT TCCGTGATGC CTGGCCCGAG GTCGAACTGG ACCTGTCTTC CGGCTTCTCG TTTGCGCCGC TGCCTGCGCT GGCGCGTGGC GATCTGGACC TGGTGGTGAC GTCCGACCCG CTGGAATTGC CCGGTATCAC TTATGTGCCG CTGTTCACGT ATGAAGCGAT GCTGGCGGTG GCCAATCAGC ATGCATTGGC GAGCAAGCCG TACATCGTTC CAGAGGACTT GCTCCCTGAA ACGCTGATCA CCTACCCGGT GGAGCGCGAC CGGCTGGACA TTTTCACCCG TTTTCTGGAG CCCGCCGACA TCGAGCCCGC ACAGGTGAGG ACCTCGGAGC TGACAGTGAT GATGATGCAA CTGGTCGCCA GCGGCCGTGG CGTGTGCGGC ATGCCGCATT GGGCGCTGCA TGAATACAGC TCACGCGGCT ATGTGAAGGC CAAACGGCTG GGCGAGAAAG GACTTTTTGC GACCCTGTAT GCCGGCATTC GCGCCGACAT GCTCGACGCA CCGTACATGC GCGACTTTCT GTTGACCGCC AAGGACACGT CGTTCTCGAC GCTGGACGGT GTGAGCGTGG TCCGCTAA
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Protein sequence | MLEIRHLKTL HALREADSLV DAAERLHLTQ SALSHQFKEL EERMGMPLFV RKTKPVRFTS AGLRLLQLAD SMLPQLRSAE RDIARLAGGT AGRLHMAIEC HSCFQWLMPT IDQFRDAWPE VELDLSSGFS FAPLPALARG DLDLVVTSDP LELPGITYVP LFTYEAMLAV ANQHALASKP YIVPEDLLPE TLITYPVERD RLDIFTRFLE PADIEPAQVR TSELTVMMMQ LVASGRGVCG MPHWALHEYS SRGYVKAKRL GEKGLFATLY AGIRADMLDA PYMRDFLLTA KDTSFSTLDG VSVVR
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