Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4172 |
Symbol | |
ID | 1185852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4700634 |
End bp | 4701380 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637395518 |
Product | amino acid ABC transporter, permease protein |
Protein accession | NP_793933 |
Protein GI | 28871314 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.364835 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTACA ACTGGGACTG GGGCGTGTTC TTCAAGTCCA CCGGCGTCGG CAGCGAGACC TATCTGGACT GGTTCATATC CGGTCTCGGC TGGACCATTG CCATTGCTGT CGTTGCCTGG ATCATAGCGC TGATACTGGG CTCGGTACTG GGCGTCATGC GCACCGTGCC AAGCCGTCTG GTATCAGGTA TTGCCACGGC CTACGTAGAA ATCTTCCGTA ACGTGCCACT GCTGGTGCAG CTGTTCATCT GGTACTTTCT GGTGCCTGAT CTGCTGCCTG CAGACCTGCA GGAGTGGTAC AAGCAGGACC TCAACCCGAC CACCTCGGCG TTTCTGAGCG TTGTCGTGTG TCTGGGTCTG TTCACTGCTG CACGGGTCTG CGAACAAGTC CGCACCGGCA TCGAGGCGTT GCCAAAGGGC CAGGAATCAG CCGCACGCGC CATGGGCTTC AAGCTGCCAC AGATCTACTG GAACGTGCTG TTGCCGCAAG CCTACCGGAT CATCATTCCG CCGCTCACCT CCGAATTCCT GAACGTGTTC AAGAACTCCT CGGTAGCGTC GCTGATCGGC CTGATGGAGC TGCTCGCACA GACCAAACAG ACCGCCGAGT TTTCCGCCAA CCTGTTTGAA GCTTTCACCC TGGCGACCCT CATCTACTTC ACGCTGAACA TGAGCCTGAT GCTGCTGATG CGCATGATCG AGAAGAAAGT TGCCGTGCCC GGCCTGATCT CTCTGGGAGG CAAATAA
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Protein sequence | MNYNWDWGVF FKSTGVGSET YLDWFISGLG WTIAIAVVAW IIALILGSVL GVMRTVPSRL VSGIATAYVE IFRNVPLLVQ LFIWYFLVPD LLPADLQEWY KQDLNPTTSA FLSVVVCLGL FTAARVCEQV RTGIEALPKG QESAARAMGF KLPQIYWNVL LPQAYRIIIP PLTSEFLNVF KNSSVASLIG LMELLAQTKQ TAEFSANLFE AFTLATLIYF TLNMSLMLLM RMIEKKVAVP GLISLGGK
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