Gene PSPTO_4172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4172 
Symbol 
ID1185852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4700634 
End bp4701380 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content57% 
IMG OID637395518 
Productamino acid ABC transporter, permease protein 
Protein accessionNP_793933 
Protein GI28871314 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.364835 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTACA ACTGGGACTG GGGCGTGTTC TTCAAGTCCA CCGGCGTCGG CAGCGAGACC 
TATCTGGACT GGTTCATATC CGGTCTCGGC TGGACCATTG CCATTGCTGT CGTTGCCTGG
ATCATAGCGC TGATACTGGG CTCGGTACTG GGCGTCATGC GCACCGTGCC AAGCCGTCTG
GTATCAGGTA TTGCCACGGC CTACGTAGAA ATCTTCCGTA ACGTGCCACT GCTGGTGCAG
CTGTTCATCT GGTACTTTCT GGTGCCTGAT CTGCTGCCTG CAGACCTGCA GGAGTGGTAC
AAGCAGGACC TCAACCCGAC CACCTCGGCG TTTCTGAGCG TTGTCGTGTG TCTGGGTCTG
TTCACTGCTG CACGGGTCTG CGAACAAGTC CGCACCGGCA TCGAGGCGTT GCCAAAGGGC
CAGGAATCAG CCGCACGCGC CATGGGCTTC AAGCTGCCAC AGATCTACTG GAACGTGCTG
TTGCCGCAAG CCTACCGGAT CATCATTCCG CCGCTCACCT CCGAATTCCT GAACGTGTTC
AAGAACTCCT CGGTAGCGTC GCTGATCGGC CTGATGGAGC TGCTCGCACA GACCAAACAG
ACCGCCGAGT TTTCCGCCAA CCTGTTTGAA GCTTTCACCC TGGCGACCCT CATCTACTTC
ACGCTGAACA TGAGCCTGAT GCTGCTGATG CGCATGATCG AGAAGAAAGT TGCCGTGCCC
GGCCTGATCT CTCTGGGAGG CAAATAA
 
Protein sequence
MNYNWDWGVF FKSTGVGSET YLDWFISGLG WTIAIAVVAW IIALILGSVL GVMRTVPSRL 
VSGIATAYVE IFRNVPLLVQ LFIWYFLVPD LLPADLQEWY KQDLNPTTSA FLSVVVCLGL
FTAARVCEQV RTGIEALPKG QESAARAMGF KLPQIYWNVL LPQAYRIIIP PLTSEFLNVF
KNSSVASLIG LMELLAQTKQ TAEFSANLFE AFTLATLIYF TLNMSLMLLM RMIEKKVAVP
GLISLGGK