Gene PSPTO_4149 details

Gene Information

• Locus tag: PSPTO_4149
• Symbol: nth
• ID: 1185829
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 4676961
• End bp: 4677599
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637395495
• Product: endonuclease III
• Protein accession: NP_793910
• Protein GI: 28871291
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0177] Predicted EndoIII-related endonuclease
• TIGRFAM ID: [TIGR01083] endonuclease III

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGCCG CAAAACGTCA GGAAATCTTT CGCAGGCTGC ATGAGGACAA TCCGGACCCT 
AAAACCGAAC TGGCCTACAC CACACCCTTC GAGCTGCTGA TCGCCGTGAT TCTTTCGGCC 
CAGGCAACTG ACGTCAGCGT CAACAAGGCC ACGGCCAGGC TTTACCCGGT TGCCAACACA 
CCGCAGGCGA TATACGAATT GGGCGTTGAG GGGCTGTCCG AATACATCAA GACCATCGGC 
CTCTACAACA GCAAAGCCAA AAACGTGATC GAAACCTGTC GAATGCTGGT GGAACTGCAC 
AACGGCGAAG TGCCCGATAC CCGAGAAGCC CTGGAGGCGC TACCGGGCGT AGGCCGCAAA 
ACGGCCAATG TCGTGCTCAA TACTGCTTTC CGGCAGATCG CCATGGCTGT CGACACGCAC 
ATTTTCCGCG TCAGCAACCG CACAGGCATT GCTCCGGGAA AAAATGTGGT GGAGGTGGAG 
AAGCAGTTGA TGAAATTCGT GCCGAAGAAC TACCTGCTCG ATGCCCATCA CTGGTTGATT 
TTACATGGAC GCTACGTTTG CCAGGCGCGC AAGCCCCGCT GCGGCAGTTG CCGCATCGAA 
GACCTGTGTG ATTTCAAAGA CAAGACTTCC GACGATTGA 

 

Protein sequence

MNAAKRQEIF RRLHEDNPDP KTELAYTTPF ELLIAVILSA QATDVSVNKA TARLYPVANT 
PQAIYELGVE GLSEYIKTIG LYNSKAKNVI ETCRMLVELH NGEVPDTREA LEALPGVGRK 
TANVVLNTAF RQIAMAVDTH IFRVSNRTGI APGKNVVEVE KQLMKFVPKN YLLDAHHWLI 
LHGRYVCQAR KPRCGSCRIE DLCDFKDKTS DD