Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4141 |
Symbol | |
ID | 1185821 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4667817 |
End bp | 4670327 |
Gene Length | 2511 bp |
Protein Length | 836 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637395487 |
Product | helicase domain protein |
Protein accession | NP_793902 |
Protein GI | 28871283 |
COG category | [R] General function prediction only |
COG ID | [COG1201] Lhr-like helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAGAC CCACTGATTT CGCTCGACGA TGGTTTCTCG CCCGAGGCTG GAAGCCGTTC GCGTTTCAGA AGGAAGTCTG GGCGGCGGTG AAGAACGGCG AGTCCGGCCT GCTGCACGCC AGCACCGGCT CCGGCAAGAC CTACGCTGTA TGGTTTGCCG CGCTCAACCG CTTCGCCAAC GCCAACGCCA ACACCAACAC CAACACCCTC ACCGCTGACG ACAAGCCACG CAAACGCAAA CCGCCCGCTG CACCGCTGAG TGTCCTGTGG ATCACGCCTA TGCGCGCGTT GGCTGCGGAT ACGGCGCGTG CGCTTGAAGC GCCGTTGGCC GAGCTGGATA TTGCGTGGTC GGTGGGGTTG CGTACCGGCG ATACCAGCGG CAGCGAGCGC GCTCGTCAGA GCCGACGCCT GCCCTCGGCA CTGATCACTA CACCGGAAAG CCTGACCCTG CTGCTGACCC GCGCCGATGC ACAGGTCGCC TTGTCAACGC TGAAAATGGT CGTGGTGGAC GAATGGCACG AGCTGATCGG TAACAAACGT GGCGTGCAAC TGCAATTGGC TCTGGCTCGA CTGCGCCATT GGAACCCGCA ACTGATTGTG TGGGGTATTT CCGCAACGCT GGGCAATCAG GAGCATGCGC AGCAGGTACT GATCGGCGAC GGCGGCGTGA CCGTGCAGGG CAAGATCGTC AAGCAATTGC TGGTCGATAC GCTGTTGCCG ACTGCCATCG AGCGCTTTCC GTGGGCCGGG CACATGGGCC TGCGCATGTT GCCGCAAGTG GTCGCCGAGG TGCACAGCAG TGCCAGTTGC CTGGTGTTCA CCAATACCCG GGCGCAATCG GAAATCTGGT ATCAGGCTCT GCTCGAAGCG CGCCCCGACT GGGCCGGGCT GATTGCCCTG CATCATGGAT CGCTGGCCCG GGAAGTCCGT GACTGGGTCG AGCGCGCCTT GAAGGAAGGT GTGCTCAAGG CCGTGGTGTG CACCTCAAGC CTGGACCTGG GCGTGGATTT CCTGCCCGTC GAACGCGTAC TGCAAATCGG CTCACCCAAA GGCGTCGCCC GCCTGATGCA ACGCGCCGGG CGTTCAGGCC ATGCGCCAGG CCGCCCTTCA CGCGTGACGC TGGTGCCCAC CCACAGCCTG GAACTGGTCG AAGCCGCCGC CGCCCACGAT GCCGTGGCAG CCAGAATGAT CGAGCCGCGT GAATCCCCCC ACCAGCCACT TGATGTGCTG GTGCAGCACC TGGTCAGCAT GGCGCTGGGC GGCGGTTTTC TGCCCGACGA GCTGCTGGTG GAAGTGCGCA GCGCATGGGC CTACCGCGAC CTCAGCGATG ACCAATGGCA ATGGGCGCTG GCGTTCGTGC GCAACGGCGG TCACTCGCTG ACCGCTTACC CGGATTACCG CCGCGCCGAA CCGGACGAAC ACGGTGTCTG GCGTGTTCCC GATGCGCGTC TGGCCCGTCG GCACCGCATG AGCGTCGGTA CCATCGTCAG TGAAGCCACC GTCAACCTCA AATACTGGAA AAAAGGCGGC GGTGGCGGCT CGCTGGGCAG CGTGGAGGAA GGCTTCATCG CCCGGCTCAA GCCCGGCGAC GGCTTTCTGT TCGGCGGGCG TTTGCTGGAG TTGGTGCGGG TGGAAAACAT GACCGCCTAC GTCAAGCGTG CCACCGGCAA GAAAGCCGCC GTGCCCCGCT GGAATGGTGG ACGAATGCCG TTGTCCAGCG AGCTGGCAAA CGCCGTGGTA GAGCAATTCG ATGCCGCCGC ACGAGGTGAA TTCAATAGCC CGGAAATGCA GGCCATCAAG CCGCTGCTGG AAGTGCAGCA GCAATGGTCG GGCCTGCCGC AACGCGACAC GCTGCTGGCC GAAACGCTAA AATCCCGCGA AGGCTGGCAC CTGTTTCTTT ACCCGTTCGC TGGCCGCCAT GTGCACCTGG GGCTGGGCAG CTTGCTGGCA TGGCGCCTTA GCCGCTATCA GCCGCTGACC TTCTCGATCG CGGTCAACGA CTATGGTCTG GAGCTGCTCA GTGCCAGCGA GATTGACTGG GCGCAAGCAT TGCAAGGCGA TCTTTTCAGC GAAACCGATC TACTGGCGGA CATTATCGCC AGCCTGAACG CGGGCGAGCT GGCCTTGCGA CGCTTTCGTG AAATCGCCCG GATCTCGGGG CTGGTGTTTT CCGGCTACCC GGGAGCGGCC AAGAGCAATC GTCAGCTTCA GGCATCCAGT GGTTTGTTTT TTGAAGTATT CAAACAGTAC GACGCCGAGA ACATGCTGCT GACTCAAGCC GAACAAGAGG TGTTGCGCCA GGAACTGGAC TTGCAACGCC TGGAGCTGAC CTTGCGCCAG ATCAACAGTC GGACGCTGGA CCTGCATGCG ATAAAACGCG CCACGCCGCT GGCGTTTCCG CTGCTGGTCG AGCGTTTTCG TGAGAGCCTC AGTTCGGAAA AACTCGCCGA CCGCATCGCG CGCATGGTCC GCGATCTGGA AAAAGCTGCA GGGCCGGAGC CTGAACGATG A
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Protein sequence | MSRPTDFARR WFLARGWKPF AFQKEVWAAV KNGESGLLHA STGSGKTYAV WFAALNRFAN ANANTNTNTL TADDKPRKRK PPAAPLSVLW ITPMRALAAD TARALEAPLA ELDIAWSVGL RTGDTSGSER ARQSRRLPSA LITTPESLTL LLTRADAQVA LSTLKMVVVD EWHELIGNKR GVQLQLALAR LRHWNPQLIV WGISATLGNQ EHAQQVLIGD GGVTVQGKIV KQLLVDTLLP TAIERFPWAG HMGLRMLPQV VAEVHSSASC LVFTNTRAQS EIWYQALLEA RPDWAGLIAL HHGSLAREVR DWVERALKEG VLKAVVCTSS LDLGVDFLPV ERVLQIGSPK GVARLMQRAG RSGHAPGRPS RVTLVPTHSL ELVEAAAAHD AVAARMIEPR ESPHQPLDVL VQHLVSMALG GGFLPDELLV EVRSAWAYRD LSDDQWQWAL AFVRNGGHSL TAYPDYRRAE PDEHGVWRVP DARLARRHRM SVGTIVSEAT VNLKYWKKGG GGGSLGSVEE GFIARLKPGD GFLFGGRLLE LVRVENMTAY VKRATGKKAA VPRWNGGRMP LSSELANAVV EQFDAAARGE FNSPEMQAIK PLLEVQQQWS GLPQRDTLLA ETLKSREGWH LFLYPFAGRH VHLGLGSLLA WRLSRYQPLT FSIAVNDYGL ELLSASEIDW AQALQGDLFS ETDLLADIIA SLNAGELALR RFREIARISG LVFSGYPGAA KSNRQLQASS GLFFEVFKQY DAENMLLTQA EQEVLRQELD LQRLELTLRQ INSRTLDLHA IKRATPLAFP LLVERFRESL SSEKLADRIA RMVRDLEKAA GPEPER
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