| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4109 |
|---|
| Symbol | |
|---|
| ID | 1185789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4632986 |
|---|
| End bp | 4633909 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637395455 |
|---|
| Product | high-affinity branched-chain amino acid ABC transporter, permease protein |
|---|
| Protein accession | NP_793870 |
|---|
| Protein GI | 28871251 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.180327 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGAGT TTTTCCACTA CATGCAGCAG CTGGTCAATG GTCTGACCAT TGGCAGTACG
TATGCATTGA TCGCCATCGG CTACACGATG GTGTACGGCA TCATTGGAAT GATCAACTTC
GCCCATGGCG AGGTGTACAT GATCGGTTCT TATGTGGCCT TCATGGCACT CGCCGGTCTG
GCGATGCTGG GGATTCATAG CCTGCCGTTG CTGATGATTG CCGGCTTTGC CGCAGCGATC
GTCGTAACCA GCGCCTACGG ATACAGCATC GAGCGTGTGG CCTATCGGCC ATTGCGCAAC
AGCAACCGTC TGATTCCACT GATTTCTGCG ATCGGCATGT CGATCTTTCT GCAGAACTCG
GTTCAGCTTT CTCAGGGTTC CGGCAACTTT GCCATCCCCA ACCTGCTGCC CGGCAGCCTG
TCGTTCGGGC CCGGTGGTTC GCAGGAAGTG CTTATTTCCT ACATGCAGAT CGTGGTGTTC
GTCGTCACCC TGCTGGCCAT GACCGGCCTG ACCCTGTTCA TCTCCCGCTC GCGAATGGGC
CGCGCCTGCC GCGCCTGCGC CGAAGACATG AAAATGGCCA ACCTGCTGGG CATCAACACC
AACAACATCA TTGCCCTGAC CTTCGTGGTC GGCGCGGCAC TGGCCGCCGT CGCCGCGATG
CTGCTGAGCA TGCAATACGG CGTGATCAAC CCGAGTGCCG GGTTTCTGGT CGGCCTGAAA
GCGTTCACAG CGGCGGTGCT GGGCGGTATA GGATCGATCC CTGGCGCGGT GCTCGGCGGT
CTGGTATTGG GCGTCGCCGA GGCGTTCGGT GCCGACATTT TCGGTGATCA GTACAAGGAC
GTCGTGGCCT TCGGCCTGCT GGTTCTGGTG CTGCTGTTCC GACCGACCGG TATTCTGGGT
CGTCCGGAGG TTGAAAAAGT ATGA
|
|---|
| Protein sequence | MPEFFHYMQQ LVNGLTIGST YALIAIGYTM VYGIIGMINF AHGEVYMIGS YVAFMALAGL
AMLGIHSLPL LMIAGFAAAI VVTSAYGYSI ERVAYRPLRN SNRLIPLISA IGMSIFLQNS
VQLSQGSGNF AIPNLLPGSL SFGPGGSQEV LISYMQIVVF VVTLLAMTGL TLFISRSRMG
RACRACAEDM KMANLLGINT NNIIALTFVV GAALAAVAAM LLSMQYGVIN PSAGFLVGLK
AFTAAVLGGI GSIPGAVLGG LVLGVAEAFG ADIFGDQYKD VVAFGLLVLV LLFRPTGILG
RPEVEKV
|
|---|
| |