| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4106 |
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| Symbol | |
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| ID | 1185786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4628608 |
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| End bp | 4630878 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395452 |
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| Product | GGDEF domain/EAL domain protein |
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| Protein accession | NP_793867 |
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| Protein GI | 28871248 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.624649 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGCTG GCCTGCCAGC GGACGGGCAA TTGCTGGTCG ACTGCAGTCA TAATCTGTTT
CTGGTAGCGC TGGCCTATGG CGTGGCGTGC GCGGCGTGCT TTGCCACGCT GGACATCGCC
GACCGCGTCA TTCATGTGGA TGCCACTACA AGCCGGCGCG TATGGAAAGC GTTGGGCGCA
CTCTGCCTGG CGGGCGGTGT GTGGGCCATG CACTTCATCA GCATGCTGGC GTTTCAGGCA
CCGCTGAAAA TCTCCTACGA CCTGACCATT ACCCTGGTGT CGCTGCTGAT CGTGCTGATC
ACGGCACTGG GCGCCATGAA AGCCCTGACC ATCCCGGAGC TGACCCTCAA GCGCTGCCTG
ATCAGCTCGG TGATCATGGG CATAGGCATC AGCACCATGC ACTACCTGGG CATGTCGGCC
ATGCGCTCCG CAGCCACGCA ATACTACGAG CCGCGAATGT TCGCGCTGTC GATCGTGGTC
GCTGTGCTCT CCAGCATCGC GCTGCTGACT CTGTCACGCC ACTTGCGTCA GTACAGCGGC
ATGTTCCATC AGATGTTTCG CTATGGCGTC AGCCTGCTGC TGGGCGCAGG CTTGCTGACC
ATGCACCTGA TGGGCATGCG AGCGCTGCGC CTGGTTATCC CCGAGAACGC CGAGCTGCAC
ATTCCCGGCA CCGAAAACAG TCAACAACTG GGGCTGACCA TTGCGGCCAT TACCCTGCTG
ATCATCGCCG GGAGTATCAG CGCGGCAATG GCCGACAAGA AGCTGCAGGG CAAGGAAAAT
GACCTGCAAC GGGTCAACGC CCTGCTCACC CAGCTGGATC AGGCACGCGT TTCGCTCCAG
CAAGTGGCGC ATTACGACCC GCTGACCAAC CTGATCAACC GCCGCGGCTT CAATCAGATA
TTCGCTGAAA AGCTGCTGGA GCACACCCAC AGCAAAGGCA TGCTGGCAGT GATGTTTCTG
GACATCGACC ACTTCAAACG CATCAACGAC AGCCTGGGGC ATGATGCCGG GGACGAGTTG
CTCAAGGTGA TCGCCGAACG CATCCGCAGC GCCACGCGTG TTCAAGACGT GGTTGCACGC
TTCGGCGGTG ATGAGTTCTG CATTCTGCTG AGCATTCCCG ATTACGAAGA GGCGCGGCAT
CTGGCGCATC GAGTCATGCA CAAAATGAAG GAACCCATCG CGCTGGCAGG ACGGCGCATG
GTCATGACCA CCAGCATTGG CATCGCGGTC TTCCCGCGTG ACGGCTCGAC CTGCGATGAA
CTGCTCAAGC ACGCAGACCT TGCGCTTTAC CAGTCCAAGG GTAACGGGCG TAACCGGGTG
AATTTCTTCA GCCCGGCACT CAAGACCAAG GCCAGCCTGG AACTGCACCT TGAGGAAGAA
CTGCGCAACG CCCTGCGTGA AGAGACAGGC CTGCAGGTCT ACTACCAGCC TATCGTCGAC
ATGCGCACCG GCCACGTCGC CAAGCTGGAA GCGCTGGTGC GCTGGCATCA CCCGCAGCAC
GGCCTGCTGG CGCCCGTTCG CTTCATCGGC ATTGCCGAAG CCAACGGTCT GATTGCCGAG
CTGGACAACT GGGTGCTGCG CCGTGCCTGT CGTGATCTGG CCACCTTGCG CAACGAGGGT
CTGGAACAGT TGATCATCAC CGTCAACTGT TCGGCACTGA CGCTTGGCCG CGACGAGCTG
GTCGAAGAGG TCGAGCAGGC GCTGGCCGAC GCCAATGCCG CGCCTGGCCG GCTGGAGCTG
GAGGTGACCG AAAATGCCTT GATGGGCAAT ATCAGCAACA CCATCCTGAT GCTCAAGCAC
ATTCGCAGCC TGGGGGTGTC GCTGTCGATC GACGACTTCG GTACGGGCTA TTCGTCACTC
GCCTACCTCA AGCGCCTGCC GCTTGACACG CTGAAGATCG ACCGGTCATT CATTATCGAC
ATCCCCGACT CGCCGCAAGA CATGGAAATC GTCCAGGCGA TTATCGTCAT GGCGCACACC
CTGCACCTGA AAGTGGTCAC CGAGGGCGTG GAAACCCCTG CACAACTGGA GTTTCTCAAC
CAGTTCGGCA GTGATTACGT GCAAGGCTAT CTGTTCAGCA GACCGCAGCC ACTGGAGCGA
ATCCTGCCTC TTGCCAAACA GATGAACGCA CGCGAAGCGA ACAGTCGATG GCCGGTGCTG
CCGTTTCCGG TCTCCAAAGA GCCGGACATC GATGTACCAG AACCCATCGA CCCGTTCGAC
GAGCTGCCCG ACAGCGACAG CTTTGTCAGC CACCGCCCCG TTCGCACCTG A
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| Protein sequence | MFAGLPADGQ LLVDCSHNLF LVALAYGVAC AACFATLDIA DRVIHVDATT SRRVWKALGA
LCLAGGVWAM HFISMLAFQA PLKISYDLTI TLVSLLIVLI TALGAMKALT IPELTLKRCL
ISSVIMGIGI STMHYLGMSA MRSAATQYYE PRMFALSIVV AVLSSIALLT LSRHLRQYSG
MFHQMFRYGV SLLLGAGLLT MHLMGMRALR LVIPENAELH IPGTENSQQL GLTIAAITLL
IIAGSISAAM ADKKLQGKEN DLQRVNALLT QLDQARVSLQ QVAHYDPLTN LINRRGFNQI
FAEKLLEHTH SKGMLAVMFL DIDHFKRIND SLGHDAGDEL LKVIAERIRS ATRVQDVVAR
FGGDEFCILL SIPDYEEARH LAHRVMHKMK EPIALAGRRM VMTTSIGIAV FPRDGSTCDE
LLKHADLALY QSKGNGRNRV NFFSPALKTK ASLELHLEEE LRNALREETG LQVYYQPIVD
MRTGHVAKLE ALVRWHHPQH GLLAPVRFIG IAEANGLIAE LDNWVLRRAC RDLATLRNEG
LEQLIITVNC SALTLGRDEL VEEVEQALAD ANAAPGRLEL EVTENALMGN ISNTILMLKH
IRSLGVSLSI DDFGTGYSSL AYLKRLPLDT LKIDRSFIID IPDSPQDMEI VQAIIVMAHT
LHLKVVTEGV ETPAQLEFLN QFGSDYVQGY LFSRPQPLER ILPLAKQMNA REANSRWPVL
PFPVSKEPDI DVPEPIDPFD ELPDSDSFVS HRPVRT
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