Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4105 |
Symbol | |
ID | 1185785 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4626944 |
End bp | 4628383 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395451 |
Product | major facilitator family transporter |
Protein accession | NP_793866 |
Protein GI | 28871247 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACTGACC ATAGAAGGAC GAATGGCGCC ATGAACAAGC TCCCGCCGGA AAACGCGACT CAAGCGGCCA ATGCCTGGCG TGTTCTGTTC CTGTTGTTTT TGGCCAATCT GTTCAACTTT TTCGATCGCA CCATTCCGGC AATCATCGTT GAGCCTATTC GTCTGGAATG GCACTTGAGC GATTTTCAAC TGGGCATGCT CGGCACTGCG TTCACACTGG TCTACGCCAT CGCCGGCCTG CCGCTGGGGC GCATGGCGGA TAACGGGTCG CGCAAAAAAC TGATGGGCTG CGGGCTGGCG GTCTGGAGCG GCTTGACGGC GGTCAATGGC ATGGTCGGCA GTTTCTGGGC GTTCCTGCTG GTACGCATGG GCGTCGGGAT AGGCGAGGCC AGTTATGCGC CTGCGGCCAA CTCGCTGATC GGCGACCTGT TTCCTGCCCA CCGGCGTGCA CGTGCAATGG GCCTGTTCAT GCTCGGTCTG CCATTGGGCT TGCTGTTGGC GTTCTTTACC ATTGGTGCGA TGGTCAAGGC GTTCGACAGC TGGCGTGCGC CATTTTTCAT TGCGGCGGTG CCCGGTCTGT TGCTGGCGGT GTTGATCTTT TTCATCAGGG AGCCCAAGCG CGGCGCTGCC GAAAACGTGC GTATGTCGCA AGCGAAGATC GACAAGCCGA TCCGCCGCGT GCTGTCGATC CCGACCTTTC GCTGGCTGGT GCTGGGCGGT CTGACCTTTA ATTTTGCGAC CTACGCCTGC AATTCATTCA TGGTGCCGAT GTTGCAGCGC TACTTCCTTC TGCCGTTGCA GGAAGCGGCG GTGGCGACAG GGATCATCGT GGGCGTTACC GGTTTGATCG GCCTGACGCT GGGCGGCTGG ATTGCCGACA AGCTGCACCA GCGCTCCGCC AATGGCCGGC TGCTGTTTGC GACTTTCAGC ATGCTGGTCG CCGCGCTGGC GACAGGCTAT GCGTTGCATG CTGGACGAAT CGAGATCGGT GTATTTGTCG GCGTTTTCAG CCTTGGCTGG CTGTTTGCCT ACAACTTTTA CACCTGCGTC TACACCGCGA TTCAGGACGT GGTCGAGCCA CGCCTGCGGG CAACCGCCAT GGCGTTGTTC TTTGCCGGGC TCTATCTGCT CGGTGGCGGG CTTGGGCCGG TGGTGGTCGG TCTGCTGTCT GATCACTTCG CCCACTCGGC GATGGGCGTG GCGGGTGTCG AGGTCATGAA CGAAAGCTTC AAGGCCATCG GCCTGCACGA CGCCATGTAC CTGATCCCGG TCGCGCTGTT TCTGACCCTG CTGTTTCTGT ATCAGGCATC GCGCTGCTTC AGCCGGGATG CCGAACGGAT GACGGCGCGC ATGGTGGCGG AAGAACCAGT GGCGGGGTTG GCGGAAGGGG TTGCCTACTT TGGCCCCATC AAAGTAGGTC GCCGAGGGGC GAAAAGGTGA
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Protein sequence | MTDHRRTNGA MNKLPPENAT QAANAWRVLF LLFLANLFNF FDRTIPAIIV EPIRLEWHLS DFQLGMLGTA FTLVYAIAGL PLGRMADNGS RKKLMGCGLA VWSGLTAVNG MVGSFWAFLL VRMGVGIGEA SYAPAANSLI GDLFPAHRRA RAMGLFMLGL PLGLLLAFFT IGAMVKAFDS WRAPFFIAAV PGLLLAVLIF FIREPKRGAA ENVRMSQAKI DKPIRRVLSI PTFRWLVLGG LTFNFATYAC NSFMVPMLQR YFLLPLQEAA VATGIIVGVT GLIGLTLGGW IADKLHQRSA NGRLLFATFS MLVAALATGY ALHAGRIEIG VFVGVFSLGW LFAYNFYTCV YTAIQDVVEP RLRATAMALF FAGLYLLGGG LGPVVVGLLS DHFAHSAMGV AGVEVMNESF KAIGLHDAMY LIPVALFLTL LFLYQASRCF SRDAERMTAR MVAEEPVAGL AEGVAYFGPI KVGRRGAKR
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