| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4101 |
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| Symbol | hopAK1 |
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| ID | 1185781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4621223 |
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| End bp | 4622890 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637395447 |
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| Product | type III helper protein HopAK1 |
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| Protein accession | NP_793862 |
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| Protein GI | 28871243 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACGA TCAACAGAAA CATCTACCCC GTCTCCGGGA TTTCTGCGCA GGATGCCCCT
GTACAAACTG ATCAGCTCCA GCCGCAAGGC CAGGGCATCA GGCCGGGGCA CAATAGCAAC
CTGATCGACT TCGGACTGAT ACAGCAGGCC AATGGTCCGC ACTCATCGCT GAACACATCG
AGCTCCAGAA TTCAGCCGAC TGACACCAGC ACATCCTCAA ACAGGCTGGG GGGTAATGGC
GATCAGTTAC TGAACAAACT CGTGGAAGCG ATCCGTAATA TCCTCAACAA CCTGCTCTCT
CTGCTGGAAG GCAATCAACA CCAGGGCTCT TCGCCTGCAC AGACCCAGCG TGAACAGACG
CCGACGTCCA CTCAATCGCA CGCTTCGCCT TCCTCGTCGT CTTCATCTTC GCCGTCGACA
TCCTCCCAGT CTTCACCCTC AGTGCCTTCA ACGCCTCAGG GCAACGCAGA AAAACCGTTT
GTGGTGCAGA GCGATCATCC GGCGGAAAAA CCGGTATCGC TGCAGAGAAC CTCAGAGCCA
ACGTCTGTGA CGCCGCCACA AACACCACCG CAGGCTGTCG AGCGAAACAG CATTACCCCG
GACAAGGCAC CGGCCAAACC CGAAGCGGTA AAGCCGGCAG TGGTCAACGA CCCGGTGCTG
CCGAAAACCT CGATCCCTGC CGCCGCCAAG CCTGACAGCA CGGTGACCGC CGCAAAACAC
GCGACGCCCG CTGCCCGTGG CCAGGGCGCT GACATGTCCG GCATGATCGG TTTTGCCAAG
GAAGCCAATA CCACCGGGGG CAACAACGGC GAAGTGGTCA CCGTGAACAC GGTTGCCGAC
CTCAAGAAGT ACATGGAGGA CGACAAAGCC CGCACCGTCA AGCTGGGGGC CAACCTGTCT
GCCGACAGTA AAGTGTCGAT AAATTTCGGG GCCAACAAAA CCCTGCTGGG CACCGATAAA
GGCAACACCC TGCACAACAT CTATCTGGCC AGCGGCAAGA CCGCCAGCAA CGACATTTTC
CAGAATCTGA ACTTCAACCA CGACGCCCGT TACCGTGAAA ACGGCGACAT GCAGATGTTC
ATCAGCAGCG GTCAGAAATA CTGGATCGAC CACATCACCG CTACCGGAAC CAAGGATCAG
AACCCCAAAG GTCTGGATAA ACTGCTCTAC GTGGGCGGCA AGGCAGATAA CGTCAGCCTG
ACCAATTCGA AATTCCAGAA CAACGAGTAT GGCGTGATTC TCGGTCAGCC GGACGACTCG
GCAGCCGCCA AAGCCGAGTA CAAGGGCTAC CCACGGATGA CAATCGCCAA CAACGTGTTC
AGCAACCTCG ATGTCCGCGG GCCCGGTCTG TTTCGTCAGG GCCAATTTGA CGTAGTTAAC
AACTCGATCG ACAAATTCCA CCTCGGTTTC ACTGCGACCG GGAACGCTAC CATCCTGTCG
CAGGCCAACT ATTTCAGCAA CGGTGTCGAT GTTTCCAACA AGGCAAGTAA TAGCGGCGTG
CTGGATGACT ACGGCGATGC GCACTTCAAA GACATCGGCA GTAACGTCAG TTTCACTCAG
AAATCGCCGG TTACCGCCTG GACACCGAGC TACAACCGGG ACGTGAAAAC AGCCGAAGCA
GCCAGAGCCT ATGACCTGGC CAATGCGGGT GCACAGGTCG TGAAATAA
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| Protein sequence | MNTINRNIYP VSGISAQDAP VQTDQLQPQG QGIRPGHNSN LIDFGLIQQA NGPHSSLNTS
SSRIQPTDTS TSSNRLGGNG DQLLNKLVEA IRNILNNLLS LLEGNQHQGS SPAQTQREQT
PTSTQSHASP SSSSSSSPST SSQSSPSVPS TPQGNAEKPF VVQSDHPAEK PVSLQRTSEP
TSVTPPQTPP QAVERNSITP DKAPAKPEAV KPAVVNDPVL PKTSIPAAAK PDSTVTAAKH
ATPAARGQGA DMSGMIGFAK EANTTGGNNG EVVTVNTVAD LKKYMEDDKA RTVKLGANLS
ADSKVSINFG ANKTLLGTDK GNTLHNIYLA SGKTASNDIF QNLNFNHDAR YRENGDMQMF
ISSGQKYWID HITATGTKDQ NPKGLDKLLY VGGKADNVSL TNSKFQNNEY GVILGQPDDS
AAAKAEYKGY PRMTIANNVF SNLDVRGPGL FRQGQFDVVN NSIDKFHLGF TATGNATILS
QANYFSNGVD VSNKASNSGV LDDYGDAHFK DIGSNVSFTQ KSPVTAWTPS YNRDVKTAEA
ARAYDLANAG AQVVK
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