| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4098 |
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| Symbol | fadD-2 |
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| ID | 1185778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4618496 |
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| End bp | 4620184 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395444 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | NP_793859 |
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| Protein GI | 28871240 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGCTG ATTTCTGGGA TGACAAGCGT CCGGCGGGTG TCGATTCCAA CGTGGATCTA
CAGGCCTATC AATCGGTCAT CGACGTGTTT GAACGCTGCT GCAAGAAGTT CGCGGACCGA
CCTGCGTTCA GCAACATGGG CGTGACCCTG ACTTATGCCG AGCTTGATCG TCATTCAGCC
GCGTTCACCG CTTATCTGCA ACAGCACACG CAACTGATGC CGGGTGACCG TATCGCCGTG
CAGATGCCCA ACCTGCTGCA ATACCCCATT GCTGTATTCG GTGCCATGCG TGCCGGTCTG
ATCGTGGTCA ACACCAACCC GTTGTACACC GCGCGCGAGA TGCGCCATCA GTTCAAGGAC
TCGGGTGCCA AGGCACTGGT CTACCTCAAT ATGTTCGGCA AGCTGGTGCA GGAAGTGCTC
CCGGACACCG CCATCGAACA TTTGATTGAA GTGAAGATGG GCGACATGCA GTCGGCGGCC
AAGGGGTGGC TGGTCAACAT CATTGTTGAC AAGGTCAAGA AGCTGGTCCC GCCATTCCGG
TTGCCCCAGG CTGTCGGCTT CAAGCGGGCA CTGCAACTGG GGCGTGACAG CCGGGTGCAG
GCCGTGGCGC AAACCCTCGA CGACGTCGCC GTGCTGCAAT ACACCGGTGG CACCACGGGG
CTGGCCAAGG GTGCGATGCT GACGCATGGC AATCTGGTCG CCAACATGCA GCAAGTCTAT
GCCTGCATGC GCCAGGACCG TCCCGAGGGT GGTCCAGTGT TTGAGGAGGG CTCGGAGGTG
ATGATTGCGC CGCTGCCGCT TTATCATATC TATGCATTCA CGGCGAACTG CATGTGCATG
ATGATCAGCG GCAACCACAA CATCCTGATT ACCAACCCGC GTGACATCGC CGGCTTCATC
AAAGAACTGG GCAAGTGGAA GTTCACCGCC ATGATCGGTC TCAATACGCT GTTCGTGGCG
CTGATGAACC ATCCCGAGTT CAAAAAGCTG GATTTCTCGG CGCTGAAAAG CACAAACTCA
GGCGGCACTG CGCTGGTCAA GGCCACGGCC GAGCGCTGGG CGCAGATCAC CGGCTGCACG
ATTGTCGAGG GCTACGGCCT GACTGAAACG TCGCCTGTGG CCAGCGCCAA CCCTTATGGA
ACGCAGGCGC GTCTGGGTAC GGTCGGTATT CCGGTGCCCG GCACTGCCAT GAAAGTCATC
GATGACGAGG GCGTGGAGCT TGCGTTCGGC GAGCGCGGCG AATTGTGCAT CAAGGGGCCG
CAGGTCATGA AAGGCTACTG GAATCGTCCG GATGCCACGG CCGAAGCACT CGACGCCGAA
GGCTGGTTCA AGACTGGCGA CATTGCCGTG ATAGCTGCCG ACGGGTTCGT CAGTATCGTG
GATCGCAAAA AGGACCTGAT CATCGTTTCA GGTTTCAACG TCTACCCCAA CGAAATCGAA
GACGTGATCA TGACTCATTC CAAGGTGGCC AACTGCGCCT GCATCGGCGT GCCGGACGAG
CGCTCCGGCG AGGCGGTGAA GCTGTTTGTC GTGCCGCGGG ACCCAAGCGT GAGCGTTGAA
GAACTCAAGG CGTTCTGCAA AGAGAATTTC ACCGCTTACA AGGTGCCCAA GCTTATTGTT
CTGCGCGATT CGTTGCCCAT GACACCGGTG GGCAAGATTT TGCGCAGGGA GCTTCGCGAC
CCGGCCTGA
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| Protein sequence | MQADFWDDKR PAGVDSNVDL QAYQSVIDVF ERCCKKFADR PAFSNMGVTL TYAELDRHSA
AFTAYLQQHT QLMPGDRIAV QMPNLLQYPI AVFGAMRAGL IVVNTNPLYT AREMRHQFKD
SGAKALVYLN MFGKLVQEVL PDTAIEHLIE VKMGDMQSAA KGWLVNIIVD KVKKLVPPFR
LPQAVGFKRA LQLGRDSRVQ AVAQTLDDVA VLQYTGGTTG LAKGAMLTHG NLVANMQQVY
ACMRQDRPEG GPVFEEGSEV MIAPLPLYHI YAFTANCMCM MISGNHNILI TNPRDIAGFI
KELGKWKFTA MIGLNTLFVA LMNHPEFKKL DFSALKSTNS GGTALVKATA ERWAQITGCT
IVEGYGLTET SPVASANPYG TQARLGTVGI PVPGTAMKVI DDEGVELAFG ERGELCIKGP
QVMKGYWNRP DATAEALDAE GWFKTGDIAV IAADGFVSIV DRKKDLIIVS GFNVYPNEIE
DVIMTHSKVA NCACIGVPDE RSGEAVKLFV VPRDPSVSVE ELKAFCKENF TAYKVPKLIV
LRDSLPMTPV GKILRRELRD PA
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