Gene PSPTO_4089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4089 
Symbol 
ID1185769 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4600859 
End bp4601647 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content62% 
IMG OID637395435 
Producthydrolase, alpha/beta fold family 
Protein accessionNP_793850 
Protein GI28871231 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID[TIGR01250] proline-specific peptidases, Bacillus coagulans-type subfamily 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.05653 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTTTTT TCGAGCACGA TGACTGTTCA CTGCACTACG AAGAGTACGG CCAGGGCGAG 
CCTGTTCTGC TGCTGCACGG CCTGGGTTCC AGCTGCCAGG ACTGGGAGTA CCAGATTCCG
GTGCTGGCCA GCCACTACCG CGTCATTGTC ATGGACATGC GCGGTCATGG CCGCTCCGAC
AAGCCACACG AGCGCTACAG CATTAAAGCC ATGAGCAATG ACGTCGAAGC GCTGATCGAG
CACCTTCGGT TGGGGCCGGT GCACTTGGTG GGCCTGTCGA TGGGCGGGAT GATCGGCTTC
CAGCTGGCGG TCGATCAGCC GCACCTGCTC AAAAGCCTGT GCATCGTCAA CAGCGCGCCG
CAGGTCAAGG TCAAAAGTCC AGGCGATCTG TGGCAGTGGA TCAGGCGCTG GACCCTGTCA
CGCCTCGTCA GCATGGAAAC CCTCGGCAAG GCGCTGGGCA AGCTGCTGTT CCCCAAACCG
GAGCAGGCCG AGCTGCGGCG CAAGATGGCC GAACGCTGGG GCAGGAACGA CAAACGCGCC
TATCTGGCCA GCTTCGACGC CATCGTAGGC TGGGGTGTGG AGAACAGGCT GGGGCGTATC
ACCTGCCCGA CCTTGATTGT TGCGGCTGAA CACGACTACA CCCCGGTGTC GCTCAAGGAG
GCCTACGTCA AAAGCCTGCC CAACGCGCGA CTGGTGATCA TCAATGACTC CCGGCACGCG
ACGCCGCTGG ACCAGCCTGA GCAATTCAAT CGCACGCTGC TGGAATTCAT CGCGGGCACT
GGAGTCTGA
 
Protein sequence
MAFFEHDDCS LHYEEYGQGE PVLLLHGLGS SCQDWEYQIP VLASHYRVIV MDMRGHGRSD 
KPHERYSIKA MSNDVEALIE HLRLGPVHLV GLSMGGMIGF QLAVDQPHLL KSLCIVNSAP
QVKVKSPGDL WQWIRRWTLS RLVSMETLGK ALGKLLFPKP EQAELRRKMA ERWGRNDKRA
YLASFDAIVG WGVENRLGRI TCPTLIVAAE HDYTPVSLKE AYVKSLPNAR LVIINDSRHA
TPLDQPEQFN RTLLEFIAGT GV