| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4084 |
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| Symbol | |
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| ID | 1185764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4594116 |
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| End bp | 4598948 |
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| Gene Length | 4833 bp |
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| Protein Length | 1610 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637395431 |
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| Product | mannuronan C-5-epimerase, putative |
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| Protein accession | NP_793846 |
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| Protein GI | 28871227 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | [TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.202459 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATTCA ACACAAAAGA TTTTGGAGCT TTGGGCGACG GCGTCACGAA CGATACAGCA
GCAATTCAGG CTACGATCGA TGCGGCCGCA GCGGCGGGGG GTGGTGAAGT GGTTCTGGCG
GCAGGGACCT ACATCGTGTC CGGTGGCGAA GAGCCTTCCG ATGGCTGCCT GATGCTCAAG
AGCAACGTCA CCCTGTCAGG TGCCGGCATG GGCGAGACGA TCATCAAACT CGCGGACGGC
TCGGACACCA AAGTCACCGG CATCGTCCGC TCGGCCTACG GTGAAGAAAC CCACGACTTC
GGCATGAACA ACCTCACGCT GGACGGTAAT CGGGACGCCA CCACCGGCAA GGTGGACGGC
TGGTTCAACG GGTACATTCC GGGCTCTGAC GGCAAGGACT CGAACGTCAC CCTGGACAGC
GTCGAAATCA AGGATTGCTC GGGATACGGG TTCGACCCGC ACGAGCAGAC CGTCAATATG
GTGATCAAGA ACAGCGTGTC CCACGGCAAC GGCCTGGACG GCTTCGTGGC CGATTACCTG
AGCGACAGCG TGTTCGAGAA CAACGTCGCG TATAACAACG ATCGTCACGG CTTCAACGTG
GTGACCAGCA CCCACGACTT CACCCTGAGC AACAATATCG CCTACGGCAA TGGCAGCACC
GGCATCGTGG TGCAGCGCGG CAGCGAAAAC ATTCCTTCCC CCGCCAACAT CACCATCACC
GGCGGCGCGG TCTATGGCAA CGGTGCCGAA GGCGTGCTGA TCAAGCTGTC CAGCCAGGTG
TCGGTCAGCG GCCTGGACAT TCACGACAAC GGCAGCGCGG GCGTGCGCAT TTATGGCAGT
TCCGCGGTGG ATGTCTTTGA TAACACGCTG AGCAACAACT CCCTCGGCGC ACCGGTGCCG
GAGATCATCA TTCAGTCCTA TGACGACACC ACTGGTGTCT CCGGCAAGTA CTTCAACGGC
AGTGACAACC TGATCCGTGG CAACCTGATC ACCGGCAGCG ACAACTCTAC CTACGGCGTG
GCCGAGCGCA ACGAAGACGG CACCGATCGC AACAGCATCG TCGGCAATAC CATCAGCCAC
ACCAGTAAAG GCCTGACGCT GGTTTACGGT GATGGCAGCT TTGCGGGCGA TGCGTTCCCG
CTGGTCACCG TGCTGGGCAC AGAGGCCAAC GACGTTATTA CCGGCGGTGC GGCACACGAG
CTGATCTTCG GTCTGGCGGG CAAAGACACG CTCAACGGCG GCACGGGCGA CGACATTCTG
GTCGGCGGTG CCGGGGCCGA CAAGCTGAAC GGCGGCGCGG GTGCCGATAC CTTTCGCTTC
GATCAACTGA CCGACAGCTA TCGCACGGCG ACCACCAGCG CTACCGACCT GCTCACTGAC
TTCAACGTCA GCCAGGACCG CATCGATCTG GCGAACCTGG GCTTCACCGG GCTGGGCAGC
GGCAAGAATG GCACGCTGAA TATCAGCTAC AACGCCACCT TGGACCGCAC CTATGTCAAG
TCTCTGGACG TCGATGCAAG CGGCAACCGG TTCGAGCTGG GCCTGACCGG CAACCTGAAA
GATACACTCA ATGCCAGTCA CTTCATCTTC CAGCGCGTGA CGGAAGGCAC CGCAGGTGGC
GATACCCTGA CCGGTACTGC GGGCAACGAT GTCATCAACG GCAATGCCGG CGTGGACCGC
ATCGATGGCG GCGCGGGGGC AGACACGATC AATGGCGGTG CCGATGCCGA CACACTGACC
GGGGGCGCAG GTGCCGACGT TTTCGTCTAC AGCTCGCGCC TGGACAGCTA CCGCAATTAC
ACCGCTGGCG GGCCGAAGCA GAGCGACACC ATCGTTGACT TCAACGTCGC CGAAGACCGC
ATCGACCTTT CCGCCATTGG CCTGCGCGGG CCGGGCGATG GCAGCGCGAA CACCCTTTAC
CTGTCGCTGA ACGGCGATGG CAGCAAAACC TACGTCAAGA CCAATGCGGT TGACACCACC
GGCAATCGTT TCGAGATCGC CCTGGAAGGC AATCTGCTCG ACAAACTCGG CGCGTCCAAC
TTCATCTTCT CCAGCGCATC GGCCACCAAT CAGGCACCGG TGCTCAACAC GCCGCTGATG
GACCAGATAG TTACCGAACT GAAACCGTTC TCGTACGCCG TGCAGCCTGG TAGTTTCAGC
GACCCGGACA GCACCGCGCT GACCTACAGC GCGACACTGG CAGATAACAG CGCCCTGCCC
GACTGGCTGA AATTCGACAG CAAGACCCTG ACATTCAGCG GCACACCAGG TGGCACAGCT
TCAGGGCTCT ATTCCGTGCT GCTGACAGCC AGCGACGCGA CAGGCGCTTC GGTGGCGGAC
AGCTTCGCGA TCAATGTGGG CAACGTCGCA CCGGGCATCA TCACCGGCAC CGAAAGCGCC
GAAGCGCTTT ATGGCACCGA GGGTAACGAC ACATTGCTGG GCCTGGGTGG CGACGACACC
TTGCGCGGCG ATACCGGCGC CGACGTGCTC AACGGCGGAG CGGGCCGCGA CGCTTTGTAT
GGCGGCGCCG ATACTGACAC GTTCGTCTAC AGCACGCTCA CCGACAGCTA CCGTGACTAC
GACGCAAGCG GGCTGACCGC GACGGACACA ATCTTCGATT TCACCCCCGG TCAGGACAAG
ATCGACGTCT CCGCCTTGGG CTTTCTGGGG CTGGGCAACG GAGAAAACCA CACGCTGTAC
ATGACGCTCA ACGAGGCGGG CGACAAGACC TACGTCAAAT CCGCTACTTC CGATGTCGAA
GGCAATCGCT TTGAAATCGC CTTGAGCGGC AACCTGATCA ACACCCTGAC TGACGCAGAC
TTTGTGTTTG GCCAACGTGA GTCTCAGGAG ATTCTTTATT TGCCGACGCT GGGCCAGTCC
AACGCGCGCC TGCTGCGCAT GACCGAGGAC GACAACCAGT CCGGCACCTC GGAAATGGCC
AAGGACCTGA CCCGCTATAC CGATTACGAC GTGCGCAGCC AGTTCAACGA CGCCAACGGT
GATGCCATCG ACCTGGCGGT AGGCGGCAGC ACCGTCGTCG GTTACTCGAC CGGCACCCCG
GAAGAGCAGC GTATTTCCTG GTGGCTGACC GATACCGATC AACCTGGCCA GGCGCTGCTG
CGTGCCACCG AGCTGCTTAA GGCGCAACTG GCGTCGTTGA CGGCCATCGA CAAAGTCACC
ACCGGCATTA TCTGGGGTCA GGGCGAAGAA GCCGCTCAGG AAATAGCCCG GGCCACTGAT
AAACAAGCTG CGGCCGACCT GTACAAGGCA TCGACCCTTA AGGTGTTCGA CTACTTGCAC
GCGCAGATAG GCGACTTCAC GGTGTACCTG GCAGAAACCG GCCATTACCA GGCACAGGCA
GCCGAAGCAC GCGGCTACCC TCAGGAAAAA ATCAACGCCA TTGTCGAAGG TGCGGGTTAT
GTCCGCGCCG CTCAGGAAGC CATCGCCAGC GAACGCAGCG ACATCAAACT GGCGGTTGAC
TACACCGACC TGCCCTTGCG TTACGAGGTC AACTCGCTGG TTTACCCGGA TGACGTCTGG
CACCTGCATG AAGAGTCGGC AGAGATCGTC GGTCAGCGAC TGGCCGACTT CATTGCCGAC
GACCTGGGTT TCAGGGGCAA CGCCAGTGAC AACAATGACC CGGCGGCCAT TTTTGCGGGC
GGCCAGAACG AAGGTGGCAA CATTTTCGGC ACCAGTGACG ATGACACGCT GATCGGCAGC
GCCGGCAACG ACATACTGGA CGGCGATCAG GGTGCAGACC AGATGACGGG AGGCGATGGC
AACGACATCT ATGTGGTCGA CAACTCGCTG GATACCGTCA CCGAGAGCAA TGACTCGCCG
TCGCAGGTCG ATACCGTGGT GTCGTCTGTC AGCTGGACGC TGGGGGCCAA TGTCGAAAAT
CTGCTGCTTA CCGGCGTGTC TGCCATCGAC GGCACCGGCA ATGCGCTGAA AAACGTGATC
ACGGGTAACA GCAGCGACAA CGTTGTGGAC GGCGGAGCCG GAGGCGATTT GCTGAAAGGT
GGCGACGGCT CCGACAGCTA TTACGTCGAT GACGTGGCAG ACCGCGTGGT CGAGACCAAC
AGCGATGCGT GGGTCGGCGG CGTCGATACG GTGTACAGCG CGCTGGCGAG TTATACGCTG
GGGGCCCATC TGGAAAACAT CGCGATCACC CGTACAGACA CTGCCAACGC CACCGGCAAT
GCCTTGGATA ACGTGCTCTA CGCGGGCGCT GGCGACAATG TTATGGGTGG GCGTGACGGC
AATGACACGG CGTCGTACCT GTTCGCCAGC GCCGGGGTCA CGGTCGCGCT GAACACCAGC
GCCCAGCAAG CCACCGGCGG TTCTGGCCTG GACACCCTGA AAGGCACTGA AAACCTGACC
GGCAGCCAGT TTGCCGACTC GCTGACGGGC AACAAGAACG CCAACGTGCT GAACGGTGGC
GCTGGCAACG ATACGTTGTC CGGGGGCGCA GGCGACGATG TGTTGATCGG GAGTTCCGGT
GCGGACACTT TGATCGGTGG CACCGGGGCG GATCGCTATG TGTTCAACAG CATCGACGAG
GTGGGCCGTG ACGGCTTGCG CGACATCATC AATGGTTTCA AGGTGAGCGA AGGCGACAAA
CTGGATTTCA CAGGCTTCGA TGCCCGACCG CTTACTGATA CCCACGATGC GTTCACGTTC
ATCGGCAACT CGGCGTTCAG CGCCAACAAC ACCGGCGAGC TTCGCTTTGC CGATGGCGTG
CTGTACGGCA ATGTCGATGA CAACACCGGG GCGGACTTCG AAATCCAGCT AACGGGTGTG
CAGAGCCTGC AGGCGGCTGA CGTCATCGTC TGA
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| Protein sequence | MIFNTKDFGA LGDGVTNDTA AIQATIDAAA AAGGGEVVLA AGTYIVSGGE EPSDGCLMLK
SNVTLSGAGM GETIIKLADG SDTKVTGIVR SAYGEETHDF GMNNLTLDGN RDATTGKVDG
WFNGYIPGSD GKDSNVTLDS VEIKDCSGYG FDPHEQTVNM VIKNSVSHGN GLDGFVADYL
SDSVFENNVA YNNDRHGFNV VTSTHDFTLS NNIAYGNGST GIVVQRGSEN IPSPANITIT
GGAVYGNGAE GVLIKLSSQV SVSGLDIHDN GSAGVRIYGS SAVDVFDNTL SNNSLGAPVP
EIIIQSYDDT TGVSGKYFNG SDNLIRGNLI TGSDNSTYGV AERNEDGTDR NSIVGNTISH
TSKGLTLVYG DGSFAGDAFP LVTVLGTEAN DVITGGAAHE LIFGLAGKDT LNGGTGDDIL
VGGAGADKLN GGAGADTFRF DQLTDSYRTA TTSATDLLTD FNVSQDRIDL ANLGFTGLGS
GKNGTLNISY NATLDRTYVK SLDVDASGNR FELGLTGNLK DTLNASHFIF QRVTEGTAGG
DTLTGTAGND VINGNAGVDR IDGGAGADTI NGGADADTLT GGAGADVFVY SSRLDSYRNY
TAGGPKQSDT IVDFNVAEDR IDLSAIGLRG PGDGSANTLY LSLNGDGSKT YVKTNAVDTT
GNRFEIALEG NLLDKLGASN FIFSSASATN QAPVLNTPLM DQIVTELKPF SYAVQPGSFS
DPDSTALTYS ATLADNSALP DWLKFDSKTL TFSGTPGGTA SGLYSVLLTA SDATGASVAD
SFAINVGNVA PGIITGTESA EALYGTEGND TLLGLGGDDT LRGDTGADVL NGGAGRDALY
GGADTDTFVY STLTDSYRDY DASGLTATDT IFDFTPGQDK IDVSALGFLG LGNGENHTLY
MTLNEAGDKT YVKSATSDVE GNRFEIALSG NLINTLTDAD FVFGQRESQE ILYLPTLGQS
NARLLRMTED DNQSGTSEMA KDLTRYTDYD VRSQFNDANG DAIDLAVGGS TVVGYSTGTP
EEQRISWWLT DTDQPGQALL RATELLKAQL ASLTAIDKVT TGIIWGQGEE AAQEIARATD
KQAAADLYKA STLKVFDYLH AQIGDFTVYL AETGHYQAQA AEARGYPQEK INAIVEGAGY
VRAAQEAIAS ERSDIKLAVD YTDLPLRYEV NSLVYPDDVW HLHEESAEIV GQRLADFIAD
DLGFRGNASD NNDPAAIFAG GQNEGGNIFG TSDDDTLIGS AGNDILDGDQ GADQMTGGDG
NDIYVVDNSL DTVTESNDSP SQVDTVVSSV SWTLGANVEN LLLTGVSAID GTGNALKNVI
TGNSSDNVVD GGAGGDLLKG GDGSDSYYVD DVADRVVETN SDAWVGGVDT VYSALASYTL
GAHLENIAIT RTDTANATGN ALDNVLYAGA GDNVMGGRDG NDTASYLFAS AGVTVALNTS
AQQATGGSGL DTLKGTENLT GSQFADSLTG NKNANVLNGG AGNDTLSGGA GDDVLIGSSG
ADTLIGGTGA DRYVFNSIDE VGRDGLRDII NGFKVSEGDK LDFTGFDARP LTDTHDAFTF
IGNSAFSANN TGELRFADGV LYGNVDDNTG ADFEIQLTGV QSLQAADVIV
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